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breakpoint graph, Assertion error #48

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sarmadmehmood89 opened this issue May 22, 2025 · 0 comments
Open

breakpoint graph, Assertion error #48

sarmadmehmood89 opened this issue May 22, 2025 · 0 comments

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@sarmadmehmood89
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Hi i use CoRAL and sometimes i come across this error, and the same installation works fine for other samples, can you please guide what might be the issue

(Traceback (most recent call last):
File "/CoRAL/src/CoRAL.py", line 162, in
reconstruct_mode(args)
File "
/CoRAL/src/CoRAL.py", line 25, in reconstruct_mode
b2bn = infer_breakpoint_graph.reconstruct_graph(args)
File "/CoRAL/src/infer_breakpoint_graph.py", line 1384, in reconstruct_graph
b2bn.build_graph()
File "
/CoRAL/src/infer_breakpoint_graph.py", line 994, in build_graph
assert self.amplicon_intervals[io1][3] == self.amplicon_intervals[io2][3]
AssertionError)

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