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environment.yml
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name: TRACE_env
channels:
- conda-forge
- bioconda
- defaults
dependencies:
- bcftools=1.9=ha228f0b_4
- bedtools=2.28.0=hdf88d34_0
- htslib=1.9=ha228f0b_7
- libdeflate=1.0=h14c3975_1
- pybedtools=0.8.0=py37he860b03_1
- pysam=0.15.3=py37h5ad169c_0
- samtools=1.9=h8571acd_11
- _libgcc_mutex=0.1=main
- _r-mutex=1.0.1=anacondar_1
- biopython=1.76=py37h516909a_0
- bwidget=1.9.11=0
- bzip2=1.0.8=h516909a_0
- ca-certificates=2019.6.16=hecc5488_0
- cairo=1.14.12=h80bd089_1005
- certifi=2019.6.16=py37_1
- curl=7.65.3=hf8cf82a_0
- fontconfig=2.13.1=he4413a7_1000
- freetype=2.10.0=he983fc9_0
- gcc_linux-64=7.3.0=h553295d_8
- gettext=0.19.8.1=hc5be6a0_1002
- glib=2.56.2=had28632_1001
- graphite2=1.3.13=hf484d3e_1000
- gxx_linux-64=7.3.0=h553295d_8
- harfbuzz=1.9.0=he243708_1001
- icu=58.2=hf484d3e_1000
- jinja2=2.10.1=py_0
- joblib=0.13.2=py_0
- jpeg=9c=h14c3975_1001
- krb5=1.16.3=h05b26f9_1001
- libblas=3.8.0=11_openblas
- libcblas=3.8.0=11_openblas
- libcurl=7.65.3=hda55be3_0
- libedit=3.1.20170329=hf8c457e_1001
- libffi=3.2.1=he1b5a44_1006
- libgfortran=3.0.0=1
- libiconv=1.15=h516909a_1005
- liblapack=3.8.0=11_openblas
- libopenblas=0.3.6=h6e990d7_6
- libpng=1.6.37=hed695b0_0
- libssh2=1.8.2=h22169c7_2
- libtiff=4.0.10=h57b8799_1003
- libuuid=2.32.1=h14c3975_1000
- libxcb=1.13=h14c3975_1002
- libxml2=2.9.9=h13577e0_2
- lz4-c=1.8.3=he1b5a44_1001
- make=4.2.1=h14c3975_2004
- markupsafe=1.1.1=py37h14c3975_0
- ncurses=6.1=hf484d3e_1002
- numpy=1.17.0=py37h95a1406_0
- openssl=1.1.1c=h516909a_0
- pandas=0.25.0=py37hb3f55d8_0
- pango=1.40.14=hf0c64fd_1003
- pcre=8.41=hf484d3e_1003
- pip=19.2.1=py37_0
- pixman=0.34.0=h14c3975_1003
- pthread-stubs=0.4=h14c3975_1001
- python=3.7.3=h5b0a415_0
- python-dateutil=2.8.0=py_0
- pytz=2019.2=py_0
- r-assertthat=0.2.1=r35h6115d3f_1
- r-backports=1.1.4=r35hcdcec82_1
- r-base=3.5.1=he45234b_1005
- r-bh=1.69.0_1=r35h6115d3f_1
- r-bit=1.1_14=r35hcdcec82_1
- r-bit64=0.9_7=r35hcdcec82_1001
- r-blob=1.2.0=r35_1
- r-cli=1.1.0=r35h6115d3f_1
- r-crayon=1.3.4=r35h6115d3f_1002
- r-dbi=1.0.0=r35h6115d3f_1002
- r-dbplyr=1.4.2=r35h6115d3f_1
- r-digest=0.6.20=r35h0357c0b_1
- r-dplyr=0.8.3=r35h0357c0b_1
- r-ellipsis=0.2.0.1=r35hcdcec82_1
- r-fansi=0.4.0=r35hcdcec82_1001
- r-glue=1.3.1=r35hcdcec82_1
- r-magrittr=1.5=r35h6115d3f_1002
- r-memoise=1.1.0=r35h6115d3f_1002
- r-pillar=1.4.2=r35h6115d3f_2
- r-pkgconfig=2.0.2=r35h6115d3f_1002
- r-plogr=0.2.0=r35h6115d3f_1002
- r-prettyunits=1.0.2=r35h6115d3f_1002
- r-purrr=0.3.2=r35hcdcec82_1
- r-r6=2.4.0=r35h6115d3f_2
- r-rcpp=1.0.2=r35h0357c0b_0
- r-rlang=0.4.0=r35hcdcec82_1
- r-rsqlite=2.1.2=r35h0357c0b_0
- r-tibble=2.1.3=r35hcdcec82_1
- r-tidyselect=0.2.5=r35h0357c0b_1001
- r-utf8=1.1.4=r35hcdcec82_1001
- r-vctrs=0.2.0=r35hcdcec82_1
- r-zeallot=0.1.0=r35h6115d3f_1001
- readline=7.0=hf8c457e_1001
- rpy2=2.9.4=py37r351h941a26a_1
- scikit-learn=0.21.3=py37hcdab131_0
- scipy=1.3.0=py37h921218d_1
- setuptools=41.0.1=py37_0
- six=1.12.0=py37_1000
- sqlite=3.28.0=h8b20d00_0
- tk=8.6.9=hed695b0_1002
- tktable=2.10=h555a92e_1
- tzlocal=2.0.0=py_0
- wheel=0.33.4=py37_0
- xorg-kbproto=1.0.7=h14c3975_1002
- xorg-libice=1.0.10=h516909a_0
- xorg-libsm=1.2.3=h84519dc_1000
- xorg-libx11=1.6.8=h516909a_0
- xorg-libxau=1.0.9=h14c3975_0
- xorg-libxdmcp=1.1.3=h516909a_0
- xorg-libxext=1.3.4=h516909a_0
- xorg-libxrender=0.9.10=h516909a_1002
- xorg-renderproto=0.11.1=h14c3975_1002
- xorg-xextproto=7.3.0=h14c3975_1002
- xorg-xproto=7.0.31=h14c3975_1007
- xz=5.2.4=h14c3975_1001
- zlib=1.2.11=h516909a_1005
- zstd=1.4.0=h3b9ef0a_0
- binutils_impl_linux-64=2.31.1=h6176602_1
- binutils_linux-64=2.31.1=h6176602_8
- gcc_impl_linux-64=7.3.0=habb00fd_1
- gfortran_impl_linux-64=7.3.0=hdf63c60_1
- gfortran_linux-64=7.3.0=h553295d_8
- gxx_impl_linux-64=7.3.0=hdf63c60_1
- libgcc-ng=9.1.0=hdf63c60_0
- libgfortran-ng=7.3.0=hdf63c60_0
- libstdcxx-ng=9.1.0=hdf63c60_0