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ShapedSlp_Status.hpp
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#ifndef INCLUDE_GUARD_ShapedSlp_Status
#define INCLUDE_GUARD_ShapedSlp_Status
#include <sys/stat.h>
#include <iostream>
#include <string>
#include <stdint.h> // include uint64_t etc.
#include <map>
#include <set>
#include "Common.hpp"
#include "NaiveSlp.hpp"
#include "RecSplit.hpp"
#include <sdsl/bit_vectors.hpp>
#include <sdsl/vlc_vector.hpp>
#include <sdsl/coder.hpp>
#define PRINT_STATUS_ShapedSlp_Status
/*!
* @file ShapedSlp_Status.hpp
* @brief An SLP encoding that utilizes its shape-tree grammar
* @author Tomohiro I
* @date 2019-11-07
*/
template
<
typename tparam_var_t,
class StgDacT,
class SlpDacT,
class BalDacT,
class StgDivSelT,
class SlpDivSelT
>
class ShapedSlp_Status
{
public:
// Public constant, alias etc.
using var_t = tparam_var_t;
private:
//// parameter of RecSplit
static constexpr size_t kBucketSize = 100;
static constexpr size_t kLeaf = 8;
std::vector<char> alph_;
sdsl::sd_vector<> seqSBV_;
sdsl::sd_vector<>::rank_1_type seqRank_;
sdsl::sd_vector<>::select_1_type seqSel_;
StgDivSelT stgDivSel_;
SlpDivSelT slpDivSel_;
BalDacT vlcBalance_;
StgDacT vlcStgSeq_;
SlpDacT vlcSlpSeq_;
StgDacT vlcStg_;
SlpDacT vlcSlp_;
sux::function::RecSplit<kLeaf> * rs_; // minimal perfect hash: from "expansion lengths" to IDs for them
public:
ShapedSlp_Status
() : rs_(nullptr)
{}
ShapedSlp_Status
(
const NaiveSlp<var_t> & slp,
const bool freqSort = true
) : rs_(nullptr)
{
makeShapedSlp(slp, freqSort);
}
~ShapedSlp_Status() {
delete(rs_);
}
size_t getAlphSize() const {
return alph_.size();
}
size_t getLen() const {
return seqSBV_.size() - 1;
}
size_t getLenSeq() const {
return vlcStgSeq_.size();
}
size_t getNumRulesOfStg() const {
return stgDivSel_.size();
}
size_t getNumRulesOfSlp() const {
return slpDivSel_.size();
}
char charAt
(
const uint64_t pos //!< 0-based position
) const {
assert(pos < getLen());
const uint64_t seqPos = seqRank_(pos + 1);
const uint64_t varLen = lenOfSeqAt(seqPos);
const uint64_t prevSum = (seqPos > 0) ? seqSel_(seqPos) : 0;
return charAt(pos - prevSum, varLen, vlcStgSeq_[seqPos], vlcSlpSeq_[seqPos]);
}
char charAt
(
const uint64_t pos, //!< relative position in a variable
const uint64_t varLen, //!< expansion length of the variable
const var_t stgOffset, //!< stg offset for the variable
const var_t slpOffset //!< slp offset for the variable
) const {
assert(pos < varLen);
// std::cout << "pos = " << pos << ", varLen = " << varLen << ", stgOffset = " << stgOffset << ", slpOffset = " << slpOffset << std::endl;
if (varLen == 1) {
return alph_[slpOffset];
}
const uint64_t h = hashLen(varLen);
const uint64_t stgId = stgOffset + ((h == 0) ? 0 : stgDivSel_(h) + 1);
const uint64_t slpId = slpOffset + ((stgId == 0) ? 0 : slpDivSel_(stgId) + 1);
const uint64_t leftLen = decLeftVarLen(varLen, vlcBalance_[stgId]);
// { // debug
// std::cout << "h = " << h << ", stgDivSel_(h) = " << stgDivSel_(h) << ", slpDivSel_(stgId) = " << slpDivSel_(stgId) << ", stgId = " << stgId << ", slpId = " << slpId << ", leftLen = " << leftLen << std::endl;
// if (varLen <= leftLen) {
// std::cout << "varLen <= leftLen" << std::endl;
// exit(1);
// }
// }
if (pos < leftLen) {
return charAt(pos, leftLen, vlcStg_[2 * stgId], vlcSlp_[2 * slpId]);
} else {
return charAt(pos - leftLen, varLen - leftLen, vlcStg_[2 * stgId + 1], vlcSlp_[2 * slpId + 1]);
}
}
void expandSubstr
(
const uint64_t pos, //!< beginning position
uint64_t len, //!< length to expand
char * str //!< [out] must have length at least 'len'
) const {
assert(pos < getLen());
assert(len > 0);
assert(len <= getLen() - pos);
uint64_t seqPos = seqRank_(pos + 1);
const uint64_t varLen = lenOfSeqAt(seqPos);
const uint64_t prevSum = (seqPos > 0) ? seqSel_(seqPos) : 0;
expandSubstr(pos - prevSum, len, str, varLen, vlcStgSeq_[seqPos], vlcSlpSeq_[seqPos]);
for (uint64_t maxExLen = prevSum + varLen - pos; maxExLen < len; ) {
len -= maxExLen;
str += maxExLen;
maxExLen = lenOfSeqAt(++seqPos);
expandPref(len, str, maxExLen, vlcStgSeq_[seqPos], vlcSlpSeq_[seqPos]);
}
}
void expandSubstr
(
const uint64_t pos, //!< beginning position (relative in variable)
const uint64_t len, //!< length to expand
char * str, //!< [out] must have length at least 'len'
const uint64_t varLen, //!< expansion length of the variable
const var_t stgOffset, //!< stg offset for the variable
const var_t slpOffset //!< slp offset for the variable
) const {
// std::cout << "pos = " << pos << ", len = " << len << ", varLen = " << varLen << ", stgOffset = " << stgOffset << ", slpOffset = " << slpOffset << std::endl;
assert(pos < varLen);
if (varLen == 1) {
*str = alph_[slpOffset];
return;
}
const uint64_t h = hashLen(varLen);
const uint64_t stgId = stgOffset + ((h == 0) ? 0 : stgDivSel_(h) + 1);
const uint64_t slpId = slpOffset + ((stgId == 0) ? 0 : slpDivSel_(stgId) + 1);
const uint64_t leftLen = decLeftVarLen(varLen, vlcBalance_[stgId]);
if (pos < leftLen) {
expandSubstr(pos, len, str, leftLen, vlcStg_[2 * stgId], vlcSlp_[2 * slpId]);
if (leftLen - pos < len) {
expandPref(len - (leftLen - pos), str + (leftLen - pos), varLen - leftLen, vlcStg_[2 * stgId + 1], vlcSlp_[2 * slpId + 1]);
}
} else {
expandSubstr(pos - leftLen, len, str, varLen - leftLen, vlcStg_[2 * stgId + 1], vlcSlp_[2 * slpId + 1]);
}
}
void expandPref
(
const uint64_t len, //!< length to expand
char * str, //!< [out] must have length at least 'len'
const uint64_t varLen, //!< expansion length of the variable
const var_t stgOffset, //!< stg offset for the variable
const var_t slpOffset //!< slp offset for the variable
) const {
// std::cout << "len = " << len << ", varLen = " << varLen << ", stgOffset = " << stgOffset << ", slpOffset = " << slpOffset << std::endl;
assert(len > 0);
if (varLen == 1) {
*str = alph_[slpOffset];
return;
}
const uint64_t h = hashLen(varLen);
const uint64_t stgId = stgOffset + ((h == 0) ? 0 : stgDivSel_(h) + 1);
const uint64_t slpId = slpOffset + ((stgId == 0) ? 0 : slpDivSel_(stgId) + 1);
const uint64_t leftLen = decLeftVarLen(varLen, vlcBalance_[stgId]);
expandPref(len, str, leftLen, vlcStg_[2 * stgId], vlcSlp_[2 * slpId]);
if (len > leftLen) {
expandPref(len - leftLen, str + leftLen, varLen - leftLen, vlcStg_[2 * stgId + 1], vlcSlp_[2 * slpId + 1]);
}
}
void printStatus
(
const bool verbose = false
) const {
std::cout << "ShapedSlp_Status object (" << this << ") " << __func__ << "(" << verbose << ") BEGIN" << std::endl;
const size_t len = getLen();
const size_t alphSize = getAlphSize();
const size_t lenSeq = getLenSeq();
const size_t numRulesOfStg = getNumRulesOfStg();
const size_t numRulesOfSlp = getNumRulesOfSlp();
const size_t numDistLen = rs_->size();
std::cout << "alphSize = " << alphSize << ", len = " << len << ", lenSeq = " << lenSeq
<< ", numRulesOfSlp = " << numRulesOfSlp
<< ", numRulesOfStg = " << numRulesOfStg
<< ", numDistLen = " << numDistLen
<< std::endl;
const size_t bytesAlphSize = sizeof(std::vector<char>) + (sizeof(char) * alph_.size());
const size_t bytesSeqSBV = sdsl::size_in_bytes(seqSBV_);
const size_t bytesVlcBalance = vlcBalance_.calcMemBytes();
const size_t bytesVlcStg = vlcStg_.calcMemBytes();
const size_t bytesVlcStgSeq = vlcStgSeq_.calcMemBytes();
const size_t bytesVlcSlp = vlcSlp_.calcMemBytes();
const size_t bytesVlcSlpSeq = vlcSlpSeq_.calcMemBytes();
const size_t bytesStgDivSel = stgDivSel_.calcMemBytes();
const size_t bytesSlpDivSel = slpDivSel_.calcMemBytes();
const size_t bytesMph = calcMemBytesOfMph();
const size_t bytesSlp = calcMemBytesOfSlp();
const size_t bytesStg = calcMemBytesOfStg();
const size_t bytesEstStgWithLen = estimateEncSizeOfStgWithLen();
const size_t bytesEstSlpWithLen = estimateEncSizeOfSlpWithLen();
const size_t bytesEstSlp = estimateEncSizeOfSlp();
std::cout << "Sizes (bytes) for various approach (small o() term is ignored for the ones with est.)" << std::endl;
std::cout << "New encoding = " << bytesMph + bytesSlp + bytesStg << std::endl;
std::cout << "| Shaped Stg = " << bytesMph + bytesStg << std::endl;
std::cout << "| | MPH = " << bytesMph << std::endl;
std::cout << "| | * MPH / numDistLen = " << (double) bytesMph / numDistLen << std::endl;
std::cout << "| | seqSBV = " << bytesSeqSBV << std::endl;
std::cout << "| | vlcBalance = " << bytesVlcBalance << std::endl;
std::cout << "| | * vlcBalance / numRulesOfStg = " << (double)bytesVlcBalance / numRulesOfStg << std::endl;
std::cout << "| | vlcStg = " << bytesVlcStg << std::endl;
std::cout << "| | * vlcStg / (2 * numRulesOfStg) = " << (double)bytesVlcStg / (2 * numRulesOfStg) << std::endl;
std::cout << "| | vlcStgSeq = " << bytesVlcStgSeq << std::endl;
std::cout << "| | | vlcStgSeq / lenSeq = " << (double)bytesVlcStgSeq / lenSeq << std::endl;
std::cout << "| | stgDiv = " << bytesStgDivSel << std::endl;
std::cout << "| Shaped Slp = " << bytesSlp << std::endl;
std::cout << "| | alph = " << bytesAlphSize << std::endl;
std::cout << "| | vlcSlp = " << bytesVlcSlp << std::endl;
std::cout << "| | * vlcSlp / (2 * numRulesOfSlp) = " << (double)bytesVlcSlp / (2 * numRulesOfSlp) << std::endl;
std::cout << "| | vlcSlpSeq = " << bytesVlcSlpSeq << std::endl;
std::cout << "| | * vlcSlpSeq / lenSeq = " << (double)bytesVlcSlpSeq / lenSeq << std::endl;
std::cout << "| | slpDiv = " << bytesSlpDivSel << std::endl;
std::cout << "MaruyamaEnc of Stg + Shaped Slp (est.) = " << bytesEstStgWithLen + bytesSlp << std::endl;
std::cout << "| MaruyamaEnc of Stg (est.) = " << bytesEstStgWithLen << std::endl;
std::cout << "| Shaped Slp = " << bytesSlp << std::endl;
std::cout << "MaruyamaEnc of Stg + POSLP (est.) = " << bytesEstStgWithLen + bytesEstSlp << std::endl;
std::cout << "| MaruyamaEnc of Stg (est.) = " << bytesEstStgWithLen << std::endl;
std::cout << "| POSLP (est.) = " << bytesEstSlp << std::endl;
std::cout << "MaruyamaEnc of Slp (est.) = " << bytesEstSlpWithLen << std::endl;
if (verbose) {
std::cout << "alph_" << std::endl;
printVec(alph_);
std::cout << std::endl;
std::cout << "vlcStg_" << std::endl;
printVec(vlcStg_);
std::cout << "vlcSlp_" << std::endl;
printVec(vlcSlp_);
std::cout << "vlcBalance_" << std::endl;
for (uint64_t i = 0; i < getNumRulesOfStg(); ++i) {
std::cout << "(" << i << ":" << (vlcBalance_[i] & 1) << " " << (vlcBalance_[i] >> 1) << ") ";
}
std::cout << std::endl;
std::cout << "vlcStgSeq_" << std::endl;
printVec(vlcStgSeq_);
std::cout << "vlcSlpSeq_" << std::endl;
printVec(vlcSlpSeq_);
std::cout << "hash_" << std::endl;
for (uint64_t i = 0; i < getLen(); ++i) {
std::cout << "(" << i << ":" << hashLen(i) << ") ";
}
std::cout << std::endl;
std::cout << "stgDiv_" << std::endl;
printVec(stgDivSel_);
std::cout << "stgDivSel_" << std::endl;
for (uint64_t i = 1; i <= rs_->size(); ++i) {
std::cout << "(" << i << ":" << stgDivSel_(i) << ") ";
}
std::cout << std::endl;
std::cout << "slpDiv_" << std::endl;
printVec(slpDivSel_);
std::cout << "slpDivSel_" << std::endl;
for (uint64_t i = 1; i <= getNumRulesOfStg(); ++i) {
std::cout << "(" << i << ":" << slpDivSel_(i) << ") ";
}
std::cout << std::endl;
}
std::cout << "ShapedSlp_Status object (" << this << ") " << __func__ << "(" << verbose << ") END" << std::endl;
}
size_t calcMemBytesOfMph() const {
char fname[] = "rs_temp_output"; // temp
std::fstream fs;
fs.exceptions(std::fstream::failbit | std::fstream::badbit);
fs.open(fname, std::fstream::out | std::fstream::binary | std::fstream::trunc);
fs << (*rs_);
struct stat s;
stat(fname, &s);
return s.st_size;
}
size_t calcMemBytesOfSlp() const {
size_t bytesAlphSize = sizeof(std::vector<char>) + (sizeof(char) * alph_.size());
size_t bytesVlcSlp = vlcSlp_.calcMemBytes();
size_t bytesVlcSlpSeq = vlcSlpSeq_.calcMemBytes();
size_t bytesSlpDiv = slpDivSel_.calcMemBytes();
return bytesAlphSize + bytesVlcSlp + bytesVlcSlpSeq + bytesSlpDiv;
}
size_t calcMemBytesOfStg() const {
size_t bytesSeqSBV = sdsl::size_in_bytes(seqSBV_);
size_t bytesVlcBalance = vlcBalance_.calcMemBytes();
size_t bytesVlcStg = vlcStg_.calcMemBytes();
size_t bytesVlcStgSeq = vlcStgSeq_.calcMemBytes();
size_t bytesStgDiv = stgDivSel_.calcMemBytes();
return bytesSeqSBV + bytesVlcBalance + bytesVlcStg + bytesVlcStgSeq + bytesStgDiv;
}
size_t estimateEncSizeOfStgWithLen() const {
//// |G| lg |S| + |G| lg(1 + σ/|G|) + 5|G| + o(|G|) bits
//// in Theorem 3 of the paper "Fully-Online Grammar Compression”, SPIRE 2013
uint64_t ls = getLenSeq();
uint64_t nr = getNumRulesOfStg();
uint64_t as = 1;
return ((ls + nr) * ceilLog2(ls + nr + as) + 2 * (ls + nr)) / 8 +
((ls + nr) * log(getLen() / (ls + nr)) / log(2.0) + 3 * (ls + nr)) / 8;
}
size_t estimateEncSizeOfSlpWithLen() const {
//// |G| lg |S| + |G| lg(1 + σ/|G|) + 5|G| + o(|G|) bits
//// in Theorem 3 of the paper "Fully-Online Grammar Compression”, SPIRE 2013
uint64_t ls = getLenSeq();
uint64_t nr = getNumRulesOfSlp();
uint64_t as = getAlphSize();
// return ((ls + nr) * ceilLog2(getLen()) + (ls + nr) * log(1 + (double)as/(ls + nr)) / log(2.0) + 5 * (ls + nr)) / 8;
return estimateEncSizeOfSlp() +
((ls + nr) * log(getLen() / (ls + nr)) / log(2.0) + 3 * (ls + nr)) / 8;
}
size_t estimateEncSizeOfSlp() const {
//// |G| lg(|G| + σ) + 2|G| + o(|G|) bits
//// in Theorem 3 of the paper "Fully-Online Grammar Compression”, SPIRE 2013
uint64_t ls = getLenSeq();
uint64_t nr = getNumRulesOfSlp();
uint64_t as = getAlphSize();
return ((ls + nr) * ceilLog2(ls + nr + as) + 2 * (ls + nr)) / 8; // little cheat on representation of leaves
}
void load
(
std::istream & in
) {
uint64_t alphSize = 0;
in.read((char*) & alphSize, sizeof(alphSize));
alph_.resize(alphSize);
in.read((char*) alph_.data(), alphSize * sizeof(alph_[0]));
rs_ = new sux::function::RecSplit<kLeaf>();
in >> (*rs_);
seqSBV_.load(in);
seqRank_.load(in);
seqSel_.load(in);
stgDivSel_.load(in);
slpDivSel_.load(in);
vlcBalance_.load(in);
vlcStgSeq_.load(in);
vlcSlpSeq_.load(in);
vlcStg_.load(in);
vlcSlp_.load(in);
seqRank_.set_vector(&seqSBV_);
seqSel_.set_vector(&seqSBV_);
}
void serialize
(
std::ostream & out
) const {
assert(rs_ != nullptr);
uint64_t alphSize = getAlphSize();
out.write((char*) & alphSize, sizeof(alphSize));
out.write((char*) alph_.data(), alphSize * sizeof(alph_[0]));
out << (*rs_);
seqSBV_.serialize(out);
seqRank_.serialize(out);
seqSel_.serialize(out);
stgDivSel_.serialize(out);
slpDivSel_.serialize(out);
vlcBalance_.serialize(out);
vlcStgSeq_.serialize(out);
vlcSlpSeq_.serialize(out);
vlcStg_.serialize(out);
vlcSlp_.serialize(out);
}
private:
//// used to create input for RecSplit
std::string uint2Str(const uint64_t n) const {
std::string ret;
ret.resize(8);
for (uint64_t i = 0; i < 8; ++i) {
ret[i] = (n >> (8 * i)) & 0xFF;
}
return ret;
}
uint64_t hashLen(uint64_t len) const {
return (*rs_)(uint2Str(len));
}
uint64_t lenOfSeqAt(uint64_t i) const {
assert(i < getLenSeq());
return (i > 0) ? seqSel_(i+1) - seqSel_(i) : seqSel_(i+1);
}
uint64_t encBal
(
const uint64_t varlen,
const uint64_t leftvarlen
) const {
if (varlen/2 <= leftvarlen) {
return ((leftvarlen - varlen/2) << 1); // lsb is 0
} else {
return ((varlen/2 - leftvarlen) << 1) + 1; // lsb is 1
}
}
uint64_t decLeftVarLen
(
const uint64_t varlen,
const uint64_t balenc
) const {
if ((balenc & 1) == 0) { // lsb is 0
return varlen/2 + (balenc >> 1);
} else { // lsb is 1
return varlen/2 - (balenc >> 1);
}
}
void makeShapedSlp
(
const NaiveSlp<var_t> & slp,
const bool freqSort = true
) {
alph_.resize(slp.getAlphSize());
for (uint64_t i = 0; i < slp.getAlphSize(); ++i) {
alph_[i] = slp.getChar(i);
}
NaiveSlp<var_t> stg;
std::vector<uint64_t> slp2stg(slp.getNumRules()); // map from slp variable to stg variable
{ // make stg
stg.setLenSeq(slp.getLenSeq());
stg.setAlphSize(1); // in shape grammar all leaves are labeled with 0
stg.setChar(0, '!'); // for printing
uint64_t numRules = 0;
std::map<PairT<var_t>, var_t> p2stg;
for (uint64_t i = 0; i < slp.getNumRules(); ++i) { // assumption: each variable refers to smaller variables
PairT<var_t> p;
p.left = (slp.getLeft(i) < slp.getAlphSize()) ? 0 : slp2stg[slp.getLeft(i) - slp.getAlphSize()];
p.right = (slp.getRight(i) < slp.getAlphSize()) ? 0 : slp2stg[slp.getRight(i) - slp.getAlphSize()];
uint64_t val;
auto itr = p2stg.find(p);
if (itr != p2stg.end()) { // pair found
val = (*itr).second;
} else { // new shape grammar variable
val = ++numRules;
stg.setNumRules(numRules);
stg.setRule(val - 1, p); // alphabet size of stg is canceled by -1
p2stg.insert(std::make_pair(p, static_cast<var_t>(val)));
}
slp2stg[i] = val;
}
for (uint64_t i = 0; i < slp.getLenSeq(); ++i) {
const auto v = slp.getSeq(i);
stg.setSeq(i, (v < slp.getAlphSize()) ? 0 : slp2stg[v - slp.getAlphSize()]);
}
}
std::vector<uint64_t> stglen(stg.getNumRules());
stg.makeLenVec(stglen); // stglen is now: expansion lengths
#ifdef PRINT_STATUS_ShapedSlp_Status
{
std::cout << "height = " << slp.calcHeight() << std::endl;
}
// {
// std::map<std::pair<uint64_t, uint64_t>, uint64_t> distr;
// for (uint64_t i = 0; i < slp2stg.size(); ++i) {
// {
// const auto key = std::make_pair(stglen[slp2stg[i]], slp2stg[i] + 1);
// auto itr = distr.find(key);
// if (itr != distr.end()) {
// ++(*itr).second;
// } else {
// distr.insert(std::make_pair(key, 1));
// }
// }
// { // sum
// const auto key = std::make_pair(stglen[slp2stg[i]], 0);
// auto itr = distr.find(key);
// if (itr != distr.end()) {
// ++(*itr).second;
// } else {
// distr.insert(std::make_pair(key, 1));
// }
// }
// }
// std::ofstream ofs("distr.csv");
// for (auto itr = distr.begin(); itr != distr.end(); ++itr) {
// ofs << (itr->first).first << "," << (itr->first).second << "," << itr->second << std::endl;
// }
// }
#endif
{ // construct prefix sum data structure
sdsl::int_vector<64> psum(slp.getLenSeq());
uint64_t s = 0;
for (uint64_t i = 0; i < slp.getLenSeq(); ++i) {
s += stg.getLenOfVar(stg.getSeq(i), stglen);
psum[i] = s;
}
seqSBV_ = std::move(sdsl::sd_vector<>(psum.begin(), psum.end()));
seqRank_.set_vector(&seqSBV_);
seqSel_.set_vector(&seqSBV_);
}
{ // build minimal perfect hash
std::set<uint64_t> distLen;
for (uint64_t i = 0; i < stglen.size(); ++i) {
distLen.insert(stglen[i]);
}
// std::vector<sux::function::hash128_t> keys;
std::vector<std::string> keys;
for (auto itr = distLen.begin(); itr != distLen.end(); ++itr) {
// keys.push_back(sux::function::hash128_t(0, *itr));
keys.push_back(uint2Str(*itr));
}
rs_ = new sux::function::RecSplit<kLeaf>(keys, kBucketSize);
// { // debug check
// // std::cout << "distLen.size() = " << distLen.size() << std::endl;
// std::set<uint64_t> hashSet;
// for (uint64_t i = 0; i < stglen.size(); ++i) {
// hashSet.insert(hashLen(stglen[i]));
// }
// uint64_t i = 0;
// for (auto itr = hashSet.begin(); itr != hashSet.end(); ++itr, ++i) {
// if (*itr != i) {
// std::cout << "error: *itr vs i = " << *itr << " vs " << i << std::endl;
// exit(1);
// }
// }
// if (i != distLen.size()) {
// std::cout << "error: i vs distLen.size() " << i << ", " << distLen.size() << std::endl;
// exit(1);
// }
// }
}
std::vector<var_t> stgOrder(stg.getNumRules());
std::vector<var_t> stgOffset(stg.getNumRules());
{
for (uint64_t i = 0; i < stg.getNumRules(); ++i) {
stgOrder[i] = i;
}
if (freqSort) {
std::vector<uint64_t> ruleFreq(stg.getNumRules());
std::vector<uint64_t> alphFreq(stg.getAlphSize());
stg.makeFreqInRulesVec(ruleFreq, alphFreq);
std::stable_sort
(
stgOrder.begin(),
stgOrder.end(),
[&](uint64_t x, uint64_t y) { return ruleFreq[x] > ruleFreq[y]; }
);
}
std::vector<var_t> hashVal(stg.getNumRules());
for (uint64_t i = 0; i < stg.getNumRules(); ++i) {
hashVal[i] = hashLen(stglen[i]);
}
std::stable_sort
(
stgOrder.begin(),
stgOrder.end(),
[&](uint64_t x, uint64_t y) { return hashVal[x] < hashVal[y]; }
);
sdsl::bit_vector stgDiv(stg.getNumRules(), 0);
uint64_t offset = 0;
for (uint64_t i = 0; i < stg.getNumRules() - 1; ++i) {
stgOffset[stgOrder[i]] = offset++;
if (hashVal[stgOrder[i]] == hashVal[stgOrder[i+1]]) {
stgDiv[i] = 0;
} else {
stgDiv[i] = 1;
offset = 0;
}
}
stgDiv[stg.getNumRules() - 1] = 1;
stgOffset[stgOrder[stg.getNumRules() - 1]] = offset;
stgDivSel_.init(std::move(stgDiv));
// { // debug check
// // for (uint64_t i = 0; i < 1000; ++i) {
// // std::cout << i << ":" << hashVal[stgOrder[i]] << "(" << stgOffset[stgOrder[i]] << "), ";
// // }
// // std::cout << std::endl;
// uint64_t hv = 0;
// for (uint64_t i = 0; i < stg.getNumRules(); ++i) {
// if (hashVal[stgOrder[i]] > hv + 1 || hv > hashVal[stgOrder[i]]) {
// std::cout << "hv vs hashVal[stgOrder[i]] failed: " << hv << ", " << hashVal[stgOrder[i]] << std::endl;
// exit(1);
// }
// hv = hashVal[stgOrder[i]];
// }
// }
}
std::vector<var_t> slpOrder(slp.getNumRules());
std::vector<var_t> slpOffset(slp.getNumRules());
std::vector<var_t> slp2stgRank(slp.getNumRules());
{
for (uint64_t i = 0; i < slpOrder.size(); ++i) {
slpOrder[i] = i;
}
if (freqSort) {
std::vector<uint64_t> ruleFreq(slp.getNumRules());
std::vector<uint64_t> alphFreq(slp.getAlphSize()); // TODO: sorting alphabet based on frequency
slp.makeFreqInRulesVec(ruleFreq, alphFreq);
std::stable_sort
(
slpOrder.begin(),
slpOrder.end(),
[&](uint64_t x, uint64_t y) { return ruleFreq[x] > ruleFreq[y]; }
);
}
std::vector<var_t> stgRank(stg.getNumRules());
for (uint64_t i = 0; i < stgOrder.size(); ++i) {
stgRank[stgOrder[i]] = i;
}
for (uint64_t i = 0; i < slpOrder.size(); ++i) {
slp2stgRank[i] = stgRank[slp2stg[i] - 1]; // replace stg with rank of stg (-1 to cancel a letter)
}
std::stable_sort
(
slpOrder.begin(),
slpOrder.end(),
[&](uint64_t x, uint64_t y) { return slp2stgRank[x] < slp2stgRank[y]; }
);
sdsl::bit_vector slpDiv(slp.getNumRules(), 0);
uint64_t offset = 0;
for (uint64_t i = 0; i < slp.getNumRules() - 1; ++i) {
slpOffset[slpOrder[i]] = offset++;
if (slp2stgRank[slpOrder[i]] == slp2stgRank[slpOrder[i+1]]) {
slpDiv[i] = 0;
} else {
slpDiv[i] = 1;
offset = 0;
}
}
slpDiv[slp.getNumRules() - 1] = 1;
slpOffset[slpOrder[slp.getNumRules() - 1]] = offset;
slpDivSel_.init(std::move(slpDiv));
}
{
const uint64_t dfsize = stg.getNumRules();
std::vector<uint64_t> df(dfsize);
for (uint64_t stgpos = 0; stgpos < stg.getNumRules(); ++stgpos) {
const uint64_t stgRuleId = stgOrder[stgpos]; // in [0..stg.getNumRules())
const uint64_t stgLeftVar = stg.getLeft(stgRuleId); // in [0..stg.getNumRules() + stg.getAlphSize())
const uint64_t varlen = stglen[stgRuleId];
const uint64_t leftvarlen = stg.getLenOfVar(stgLeftVar, stglen);
df[stgpos] = encBal(varlen, leftvarlen);
}
vlcBalance_.init(df);
#ifdef PRINT_STATUS_ShapedSlp_Status
{
uint64_t strictBitSize = 0;
for (uint64_t i = 0; i < dfsize; ++i) {
strictBitSize += ceilLog2((df[i] + 1)); // + 1 for gamma code
}
std::cout << "strictBitSize for vlcBalance_ = " << strictBitSize << std::endl;
std::cout << "@ dfsize = " << dfsize << std::endl;
std::cout << "@ strictBitSize / dfsize = " << (double)strictBitSize / dfsize << std::endl;
}
// { // debug check
// for (uint64_t pos = 0; pos < dfsize; ++pos) {
// if (df[pos] != vlcBalance_[pos]) {
// std::cout << pos << ": " << df[pos] << ", " << vlcBalance_[pos] << std::endl;
// exit(1);
// }
// }
// }
#endif
}
{
const uint64_t dfsize = 2 * stg.getNumRules();
std::vector<uint64_t> df(dfsize);
uint64_t dfpos = 0;
for (uint64_t stgpos = 0; stgpos < stg.getNumRules(); ++stgpos) {
const uint64_t stgRuleId = stgOrder[stgpos]; // in [0..stg.getNumRules())
const uint64_t stgLeftVar = stg.getLeft(stgRuleId); // in [0..stg.getNumRules() + stg.getAlphSize())
const uint64_t stgRightVar = stg.getRight(stgRuleId); // in [0..stg.getNumRules() + stg.getAlphSize())
df[dfpos++] = (stgLeftVar < stg.getAlphSize()) ? stgLeftVar : stgOffset[stgLeftVar - stg.getAlphSize()];
df[dfpos++] = (stgRightVar < stg.getAlphSize()) ? stgRightVar : stgOffset[stgRightVar - stg.getAlphSize()];
}
vlcStg_.init(df);
#ifdef PRINT_STATUS_ShapedSlp_Status
{
uint64_t strictBitSize = 0;
for (uint64_t i = 0; i < dfsize; ++i) {
strictBitSize += ceilLog2((df[i] + 1)); // + 1 for gamma code
}
std::cout << "strictBitSize for vlcStg_ = " << strictBitSize << std::endl;
std::cout << "@ dfsize = " << dfsize << std::endl;
std::cout << "@ strictBitSize / dfsize = " << (double)strictBitSize / dfsize << std::endl;
}
// { // debug check
// for (uint64_t pos = 0; pos < dfsize; ++pos) {
// if (df[pos] != vlcStg_[pos]) {
// std::cout << pos << ": " << df[pos] << ", " << vlcStg_[pos] << std::endl;
// exit(1);
// }
// }
// }
#endif
}
{
const uint64_t dfsize = 2 * slp.getNumRules();
std::vector<uint64_t> df(dfsize);
uint64_t dfpos = 0;
for (uint64_t slppos = 0; slppos < slp.getNumRules(); ++slppos) {
{
const uint64_t slpRuleId = slpOrder[slppos]; // in [0..slp.getNumRules())
const uint64_t slpLeftVar = slp.getLeft(slpRuleId); // in [0..slp.getNumRules() + slp.getAlphSize())
const uint64_t slpRightVar = slp.getRight(slpRuleId); // in [0..slp.getNumRules() + slp.getAlphSize())
df[dfpos++] = (slpLeftVar < slp.getAlphSize()) ? slpLeftVar : slpOffset[slpLeftVar - slp.getAlphSize()];
df[dfpos++] = (slpRightVar < slp.getAlphSize()) ? slpRightVar : slpOffset[slpRightVar - slp.getAlphSize()];
}
}
vlcSlp_.init(df);
#ifdef PRINT_STATUS_ShapedSlp_Status
{
uint64_t strictBitSize = 0;
for (uint64_t i = 0; i < dfsize; ++i) {
strictBitSize += ceilLog2((df[i] + 1)); // + 1 for gamma code
}
std::cout << "strictBitSize for vlcSlp_ = " << strictBitSize << std::endl;
std::cout << "@ dfsize = " << dfsize << std::endl;
std::cout << "@ strictBitSize / dfsize = " << (double)strictBitSize / dfsize << std::endl;
}
// { // debug check
// for (uint64_t pos = 0; pos < dfsize; ++pos) {
// if (df[pos] != vlcSlp_[pos]) {
// std::cout << pos << ": " << df[pos] << ", " << vlcSlp_[pos] << std::endl;
// exit(1);
// }
// }
// }
#endif
}
{
const uint64_t dfsize = slp.getLenSeq();
std::vector<uint64_t> df(dfsize);
for (uint64_t pos = 0; pos < dfsize; ++pos) {
const uint64_t stgVar = stg.getSeq(pos);
df[pos] = (stgVar < stg.getAlphSize()) ? stgVar : stgOffset[stgVar - stg.getAlphSize()];
}
vlcStgSeq_.init(df);
#ifdef PRINT_STATUS_ShapedSlp_Status
{
uint64_t strictBitSize = 0;
for (uint64_t i = 0; i < dfsize; ++i) {
strictBitSize += ceilLog2((df[i] + 1)); // + 1 for gamma code
}
std::cout << "strictBitSize for vlcStgSeq_ = " << strictBitSize << std::endl;
std::cout << "@ dfsize = " << dfsize << std::endl;
std::cout << "@ strictBitSize / dfsize = " << (double)strictBitSize / dfsize << std::endl;
}
// { // debug check
// for (uint64_t pos = 0; pos < dfsize; ++pos) {
// if (df[pos] != vlcStgSeq_[pos]) {
// std::cout << pos << ": " << df[pos] << ", " << vlcStgSeq_[pos] << std::endl;
// exit(1);
// }
// }
// }
#endif
}
{
const uint64_t dfsize = slp.getLenSeq();
std::vector<uint64_t> df(dfsize);
for (uint64_t pos = 0; pos < dfsize; ++pos) {
const uint64_t slpVar = slp.getSeq(pos);
df[pos] = (slpVar < slp.getAlphSize()) ? slpVar : slpOffset[slpVar - slp.getAlphSize()];
}
vlcSlpSeq_.init(df);
#ifdef PRINT_STATUS_ShapedSlp_Status
{
uint64_t strictBitSize = 0;
for (uint64_t i = 0; i < dfsize; ++i) {
strictBitSize += ceilLog2((df[i] + 1)); // + 1 for gamma code
}
std::cout << "strictBitSize for vlcSlpSeq_ = " << strictBitSize << std::endl;
std::cout << "@ dfsize = " << dfsize << std::endl;
std::cout << "@ strictBitSize / dfsize = " << (double)strictBitSize / dfsize << std::endl;
}
// { // debug check
// for (uint64_t pos = 0; pos < dfsize; ++pos) {
// if (df[pos] != vlcSlpSeq_[pos]) {
// std::cout << pos << ": " << df[pos] << ", " << vlcSlpSeq_[pos] << std::endl;
// exit(1);
// }
// }
// }
#endif
}
#ifdef PRINT_STATUS_ShapedSlp_Status
{
std::stable_sort
(
stgOrder.begin(),
stgOrder.end(),
[&](uint64_t x, uint64_t y) { return stglen[x] < stglen[y]; }
);
std::vector<var_t> stgRank(stg.getNumRules());
for (uint64_t i = 0; i < stgOrder.size(); ++i) {
stgRank[stgOrder[i]] = i;
}
std::vector<uint64_t> ruleFreq(slp.getNumRules());
std::vector<uint64_t> alphFreq(slp.getAlphSize());
slp.makeFreqInRulesVec(ruleFreq, alphFreq);
std::stable_sort
(
slpOrder.begin(),
slpOrder.end(),
[&](uint64_t x, uint64_t y) { return stgRank[slp2stg[x]] < stgRank[slp2stg[y]]; }
);
// std::cout << "alphFreq:" << std::endl;
// std::sort(alphFreq.begin(), alphFreq.end());
// printVec(alphFreq);
std::vector<var_t> slpOffset1(slp.getNumRules());
uint64_t offset = 0;
slpOffset1[slpOrder[0]] = offset++;
for (uint64_t i = 1; i < slp.getNumRules(); ++i) {
if (stglen[slp2stg[slpOrder[i]]] != stglen[slp2stg[slpOrder[i-1]]]) {
offset = 0;
}
slpOffset1[slpOrder[i]] = offset++;
}
std::ofstream ofs("distr1.csv");
for (uint64_t i = 0; i < slpOrder.size(); ++i) {
const uint64_t slpId = slpOrder[i];
const uint64_t stgId = slp2stg[slpId];
ofs << stglen[stgId] << "," << ruleFreq[slpId] << "," << slpOffset1[slpId] << "," << slpOffset[slpId] << "," << stgOffset[stgId] << std::endl;
}
}
#endif
}
};
#endif