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Installation issue on OS X#86
@jonahcullen

Description

@jonahcullen
jonahcullen
opened on Jun 19, 2019

Unable to install cob via pip on Mac OS X.

Error output:

Building wheels for collected packages: camoco, minus80, pyyaml, termcolor, powerlaw, bcolz, blaze, python-Levenshtein, mpmath, odo, psutil, sqlalchemy, toolz, backcall, datashape, googleapis-common-protos
Building wheel for camoco (setup.py) ... done
Stored in directory: /Users/jonahcullen/Library/Caches/pip/wheels/77/fe/55/fe8c0899e7b68afcf0ba769c6878b2515e5f852074e8d091b3
Building wheel for minus80 (setup.py) ... done
Stored in directory: /Users/jonahcullen/Library/Caches/pip/wheels/6e/07/99/895d82345142bb7295d5b814fdd28965e44db162444ed17e7c
Building wheel for pyyaml (setup.py) ... done
Stored in directory: /Users/jonahcullen/Library/Caches/pip/wheels/16/27/a1/775c62ddea7bfa62324fd1f65847ed31c55dadb6051481ba3f
Building wheel for termcolor (setup.py) ... done
Stored in directory: /Users/jonahcullen/Library/Caches/pip/wheels/7c/06/54/bc84598ba1daf8f970247f550b175aaaee85f68b4b0c5ab2c6
Building wheel for powerlaw (setup.py) ... done
Stored in directory: /Users/jonahcullen/Library/Caches/pip/wheels/e0/27/02/08d0e2865072bfd8d7c655e290521e3feca3fc22f1ac460601
Building wheel for bcolz (setup.py) ... error
ERROR: Complete output from command /Users/jonahcullen/miniconda3/envs/cob/bin/python -u -c 'import setuptools, tokenize;file='"'"'/private/var/folders/9x/11k30prx6_56pv3g4cfy1wm80000gn/T/pip-install-pf8ikdns/bcolz/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(file);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, file, '"'"'exec'"'"'))' bdist_wheel -d /private/var/folders/9x/11k30prx6_56pv3g4cfy1wm80000gn/T/pip-wheel-le_2qmvm --python-tag cp36:
ERROR: SSE2 detected
AVX2 detected
running bdist_wheel
running build
running build_py
creating build
creating build/lib.macosx-10.7-x86_64-3.6
creating build/lib.macosx-10.7-x86_64-3.6/bcolz
copying bcolz/py2help_tests.py -> build/lib.macosx-10.7-x86_64-3.6/bcolz
copying bcolz/version.py -> build/lib.macosx-10.7-x86_64-3.6/bcolz
copying bcolz/toplevel.py -> build/lib.macosx-10.7-x86_64-3.6/bcolz
copying bcolz/ctable.py -> build/lib.macosx-10.7-x86_64-3.6/bcolz
copying bcolz/init.py -> build/lib.macosx-10.7-x86_64-3.6/bcolz
copying bcolz/utils.py -> build/lib.macosx-10.7-x86_64-3.6/bcolz
copying bcolz/chunked_eval.py -> build/lib.macosx-10.7-x86_64-3.6/bcolz
copying bcolz/defaults.py -> build/lib.macosx-10.7-x86_64-3.6/bcolz
copying bcolz/attrs.py -> build/lib.macosx-10.7-x86_64-3.6/bcolz
copying bcolz/py2help.py -> build/lib.macosx-10.7-x86_64-3.6/bcolz
copying bcolz/arrayprint.py -> build/lib.macosx-10.7-x86_64-3.6/bcolz
creating build/lib.macosx-10.7-x86_64-3.6/bcolz/tests
copying bcolz/tests/test_ndcarray.py -> build/lib.macosx-10.7-x86_64-3.6/bcolz/tests
copying bcolz/tests/test_carray_objects.py -> build/lib.macosx-10.7-x86_64-3.6/bcolz/tests
copying bcolz/tests/test_attrs.py -> build/lib.macosx-10.7-x86_64-3.6/bcolz/tests
copying bcolz/tests/init.py -> build/lib.macosx-10.7-x86_64-3.6/bcolz/tests
copying bcolz/tests/all.py -> build/lib.macosx-10.7-x86_64-3.6/bcolz/tests
copying bcolz/tests/common.py -> build/lib.macosx-10.7-x86_64-3.6/bcolz/tests
copying bcolz/tests/test_queries.py -> build/lib.macosx-10.7-x86_64-3.6/bcolz/tests
copying bcolz/tests/test_ctable.py -> build/lib.macosx-10.7-x86_64-3.6/bcolz/tests
copying bcolz/tests/test_carray.py -> build/lib.macosx-10.7-x86_64-3.6/bcolz/tests
copying bcolz/carray_ext.pxd -> build/lib.macosx-10.7-x86_64-3.6/bcolz
running build_ext
skipping 'bcolz/carray_ext.c' Cython extension (up-to-date)
building 'bcolz.carray_ext' extension
creating build/temp.macosx-10.7-x86_64-3.6
creating build/temp.macosx-10.7-x86_64-3.6/bcolz
creating build/temp.macosx-10.7-x86_64-3.6/c-blosc
creating build/temp.macosx-10.7-x86_64-3.6/c-blosc/blosc
creating build/temp.macosx-10.7-x86_64-3.6/c-blosc/internal-complibs
creating build/temp.macosx-10.7-x86_64-3.6/c-blosc/internal-complibs/lz4-1.8.1.2
creating build/temp.macosx-10.7-x86_64-3.6/c-blosc/internal-complibs/snappy-1.1.1
creating build/temp.macosx-10.7-x86_64-3.6/c-blosc/internal-complibs/zlib-1.2.8
creating build/temp.macosx-10.7-x86_64-3.6/c-blosc/internal-complibs/zstd-1.3.4
creating build/temp.macosx-10.7-x86_64-3.6/c-blosc/internal-complibs/zstd-1.3.4/compress
creating build/temp.macosx-10.7-x86_64-3.6/c-blosc/internal-complibs/zstd-1.3.4/dictBuilder
creating build/temp.macosx-10.7-x86_64-3.6/c-blosc/internal-complibs/zstd-1.3.4/decompress
creating build/temp.macosx-10.7-x86_64-3.6/c-blosc/internal-complibs/zstd-1.3.4/legacy
creating build/temp.macosx-10.7-x86_64-3.6/c-blosc/internal-complibs/zstd-1.3.4/common
creating build/temp.macosx-10.7-x86_64-3.6/c-blosc/internal-complibs/zstd-1.3.4/deprecated
gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/Users/jonahcullen/miniconda3/envs/cob/include -arch x86_64 -I/Users/jonahcullen/miniconda3/envs/cob/include -arch x86_64 -DHAVE_LZ4=1 -DHAVE_SNAPPY=1 -DHAVE_ZLIB=1 -DHAVE_ZSTD=1 -Ibcolz -Ic-blosc/blosc -Ic-blosc/internal-complibs/zstd-1.3.4 -Ic-blosc/internal-complibs/lz4-1.8.1.2 -Ic-blosc/internal-complibs/snappy-1.1.1 -Ic-blosc/internal-complibs/zlib-1.2.8 -Ic-blosc/internal-complibs/zstd-1.3.4/compress -Ic-blosc/internal-complibs/zstd-1.3.4/dictBuilder -Ic-blosc/internal-complibs/zstd-1.3.4/decompress -Ic-blosc/internal-complibs/zstd-1.3.4/legacy -Ic-blosc/internal-complibs/zstd-1.3.4/common -Ic-blosc/internal-complibs/zstd-1.3.4/dll -Ic-blosc/internal-complibs/zstd-1.3.4/deprecated -I/Users/jonahcullen/miniconda3/envs/cob/lib/python3.6/site-packages/numpy/core/include -I/Users/jonahcullen/miniconda3/envs/cob/include/python3.6m -c bcolz/carray_ext.c -o build/temp.macosx-10.7-x86_64-3.6/bcolz/carray_ext.o -DSHUFFLE_SSE2_ENABLED -msse2 -DSHUFFLE_AVX2_ENABLED -mavx2
In file included from bcolz/carray_ext.c:525:
In file included from /Users/jonahcullen/miniconda3/envs/cob/lib/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4:
In file included from /Users/jonahcullen/miniconda3/envs/cob/lib/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:12:
In file included from /Users/jonahcullen/miniconda3/envs/cob/lib/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822:
/Users/jonahcullen/miniconda3/envs/cob/lib/python3.6/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings]
#warning "Using deprecated NumPy API, disable it with "
^
1 warning generated.
gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/Users/jonahcullen/miniconda3/envs/cob/include -arch x86_64 -I/Users/jonahcullen/miniconda3/envs/cob/include -arch x86_64 -DHAVE_LZ4=1 -DHAVE_SNAPPY=1 -DHAVE_ZLIB=1 -DHAVE_ZSTD=1 -Ibcolz -Ic-blosc/blosc -Ic-blosc/internal-complibs/zstd-1.3.4 -Ic-blosc/internal-complibs/lz4-1.8.1.2 -Ic-blosc/internal-complibs/snappy-1.1.1 -Ic-blosc/internal-complibs/zlib-1.2.8 -Ic-blosc/internal-complibs/zstd-1.3.4/compress -Ic-blosc/internal-complibs/zstd-1.3.4/dictBuilder -Ic-blosc/internal-complibs/zstd-1.3.4/decompress -Ic-blosc/internal-complibs/zstd-1.3.4/legacy -Ic-blosc/internal-complibs/zstd-1.3.4/common -Ic-blosc/internal-complibs/zstd-1.3.4/dll -Ic-blosc/internal-complibs/zstd-1.3.4/deprecated -I/Users/jonahcullen/miniconda3/envs/cob/lib/python3.6/site-packages/numpy/core/include -I/Users/jonahcullen/miniconda3/envs/cob/include/python3.6m -c c-blosc/blosc/blosc.c -o build/temp.macosx-10.7-x86_64-3.6/c-blosc/blosc/blosc.o -DSHUFFLE_SSE2_ENABLED -msse2 -DSHUFFLE_AVX2_ENABLED -mavx2
c-blosc/blosc/blosc.c:874:7: warning: unused variable 'rc' [-Wunused-variable]
int rc;
^
c-blosc/blosc/blosc.c:1656:7: warning: unused variable 'rc' [-Wunused-variable]
int rc;
^
c-blosc/blosc/blosc.c:2136:7: warning: unused variable 'rc' [-Wunused-variable]
int rc;
^
3 warnings generated.
gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/Users/jonahcullen/miniconda3/envs/cob/include -arch x86_64 -I/Users/jonahcullen/miniconda3/envs/cob/include -arch x86_64 -DHAVE_LZ4=1 -DHAVE_SNAPPY=1 -DHAVE_ZLIB=1 -DHAVE_ZSTD=1 -Ibcolz -Ic-blosc/blosc -Ic-blosc/internal-complibs/zstd-1.3.4 -Ic-blosc/internal-complibs/lz4-1.8.1.2 -Ic-blosc/internal-complibs/snappy-1.1.1 -Ic-blosc/internal-complibs/zlib-1.2.8 -Ic-blosc/internal-complibs/zstd-1.3.4/compress -Ic-blosc/internal-complibs/zstd-1.3.4/dictBuilder -Ic-blosc/internal-complibs/zstd-1.3.4/decompress -Ic-blosc/internal-complibs/zstd-1.3.4/legacy -Ic-blosc/internal-complibs/zstd-1.3.4/common -Ic-blosc/internal-complibs/zstd-1.3.4/dll -Ic-blosc/internal-complibs/zstd-1.3.4/deprecated -I/Users/jonahcullen/miniconda3/envs/cob/lib/python3.6/site-packages/numpy/core/include -I/Users/jonahcullen/miniconda3/envs/cob/include/python3.6m -c c-blosc/blosc/bitshuffle-generic.c -o build/temp.macosx-10.7-x86_64-3.6/c-blosc/blosc/bitshuffle-generic.o -DSHUFFLE_SSE2_ENABLED -msse2 -DSHUFFLE_AVX2_ENABLED -mavx2
gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/Users/jonahcullen/miniconda3/envs/cob/include -arch x86_64 -I/Users/jonahcullen/miniconda3/envs/cob/include -arch x86_64 -DHAVE_LZ4=1 -DHAVE_SNAPPY=1 -DHAVE_ZLIB=1 -DHAVE_ZSTD=1 -Ibcolz -Ic-blosc/blosc -Ic-blosc/internal-complibs/zstd-1.3.4 -Ic-blosc/internal-complibs/lz4-1.8.1.2 -Ic-blosc/internal-complibs/snappy-1.1.1 -Ic-blosc/internal-complibs/zlib-1.2.8 -Ic-blosc/internal-complibs/zstd-1.3.4/compress -Ic-blosc/internal-complibs/zstd-1.3.4/dictBuilder -Ic-blosc/internal-complibs/zstd-1.3.4/decompress -Ic-blosc/internal-complibs/zstd-1.3.4/legacy -Ic-blosc/internal-complibs/zstd-1.3.4/common -Ic-blosc/internal-complibs/zstd-1.3.4/dll -Ic-blosc/internal-complibs/zstd-1.3.4/deprecated -I/Users/jonahcullen/miniconda3/envs/cob/lib/python3.6/site-packages/numpy/core/include -I/Users/jonahcullen/miniconda3/envs/cob/include/python3.6m -c c-blosc/blosc/shuffle.c -o build/temp.macosx-10.7-x86_64-3.6/c-blosc/blosc/shuffle.o -DSHUFFLE_SSE2_ENABLED -msse2 -DSHUFFLE_AVX2_ENABLED -mavx2
In file included from c-blosc/blosc/shuffle.c:11:
c-blosc/blosc/shuffle-generic.h:32:13: warning: unused function 'shuffle_generic_inline' [-Wunused-function]
static void shuffle_generic_inline(const size_t type_size,
^
c-blosc/blosc/shuffle-generic.h:61:13: warning: unused function 'unshuffle_generic_inline' [-Wunused-function]
static void unshuffle_generic_inline(const size_t type_size,
^
2 warnings generated.
gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/Users/jonahcullen/miniconda3/envs/cob/include -arch x86_64 -I/Users/jonahcullen/miniconda3/envs/cob/include -arch x86_64 -DHAVE_LZ4=1 -DHAVE_SNAPPY=1 -DHAVE_ZLIB=1 -DHAVE_ZSTD=1 -Ibcolz -Ic-blosc/blosc -Ic-blosc/internal-complibs/zstd-1.3.4 -Ic-blosc/internal-complibs/lz4-1.8.1.2 -Ic-blosc/internal-complibs/snappy-1.1.1 -Ic-blosc/internal-complibs/zlib-1.2.8 -Ic-blosc/internal-complibs/zstd-1.3.4/compress -Ic-blosc/internal-complibs/zstd-1.3.4/dictBuilder -Ic-blosc/internal-complibs/zstd-1.3.4/decompress -Ic-blosc/internal-complibs/zstd-1.3.4/legacy -Ic-blosc/internal-complibs/zstd-1.3.4/common -Ic-blosc/internal-complibs/zstd-1.3.4/dll -Ic-blosc/internal-complibs/zstd-1.3.4/deprecated -I/Users/jonahcullen/miniconda3/envs/cob/lib/python3.6/site-packages/numpy/core/include -I/Users/jonahcullen/miniconda3/envs/cob/include/python3.6m -c c-blosc/blosc/fastcopy.c -o build/temp.macosx-10.7-x86_64-3.6/c-blosc/blosc/fastcopy.o -DSHUFFLE_SSE2_ENABLED -msse2 -DSHUFFLE_AVX2_ENABLED -mavx2
c-blosc/blosc/fastcopy.c:137:30: warning: unused function 'copy_32_bytes_aligned' [-Wunused-function]
static inline unsigned char *copy_32_bytes_aligned(unsigned char *out, const unsigned char *from) {
^
c-blosc/blosc/fastcopy.c:270:30: warning: unused function 'chunk_memcpy_32' [-Wunused-function]
static inline unsigned char *chunk_memcpy_32(unsigned char *out, const unsigned char *from, unsigned len) {
^
c-blosc/blosc/fastcopy.c:294:30: warning: unused function 'chunk_memcpy_32_unrolled' [-Wunused-function]
static inline unsigned char *chunk_memcpy_32_unrolled(unsigned char *out, const unsigned char *from, unsigned len) {
^
c-blosc/blosc/fastcopy.c:402:30: warning: unused function 'chunk_memcpy_aligned' [-Wunused-function]
static inline unsigned char *chunk_memcpy_aligned(unsigned char *out, const unsigned char *from, unsigned len) {
^
4 warnings generated.
gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/Users/jonahcullen/miniconda3/envs/cob/include -arch x86_64 -I/Users/jonahcullen/miniconda3/envs/cob/include -arch x86_64 -DHAVE_LZ4=1 -DHAVE_SNAPPY=1 -DHAVE_ZLIB=1 -DHAVE_ZSTD=1 -Ibcolz -Ic-blosc/blosc -Ic-blosc/internal-complibs/zstd-1.3.4 -Ic-blosc/internal-complibs/lz4-1.8.1.2 -Ic-blosc/internal-complibs/snappy-1.1.1 -Ic-blosc/internal-complibs/zlib-1.2.8 -Ic-blosc/internal-complibs/zstd-1.3.4/compress -Ic-blosc/internal-complibs/zstd-1.3.4/dictBuilder -Ic-blosc/internal-complibs/zstd-1.3.4/decompress -Ic-blosc/internal-complibs/zstd-1.3.4/legacy -Ic-blosc/internal-complibs/zstd-1.3.4/common -Ic-blosc/internal-complibs/zstd-1.3.4/dll -Ic-blosc/internal-complibs/zstd-1.3.4/deprecated -I/Users/jonahcullen/miniconda3/envs/cob/lib/python3.6/site-packages/numpy/core/include -I/Users/jonahcullen/miniconda3/envs/cob/include/python3.6m -c c-blosc/blosc/blosclz.c -o build/temp.macosx-10.7-x86_64-3.6/c-blosc/blosc/blosclz.o -DSHUFFLE_SSE2_ENABLED -msse2 -DSHUFFLE_AVX2_ENABLED -mavx2
c-blosc/blosc/blosclz.c:148:35: warning: comparison of integers of different signs: 'int' and 'unsigned int' [-Wsign-compare]
if (_mm256_movemask_epi8(cmp) != 0xFFFFFFFF) {
~~~~~~~~~~~~~~~~~~~~~~~~~ ^ ~~~~~~~~~~
c-blosc/blosc/blosclz.c:219:35: warning: comparison of integers of different signs: 'int' and 'unsigned int' [-Wsign-compare]
if (_mm256_movemask_epi8(cmp) != 0xFFFFFFFF) {
~~~~~~~~~~~~~~~~~~~~~~~~~ ^ ~~~~~~~~~~
c-blosc/blosc/blosclz.c:82:24: warning: unused function 'get_run' [-Wunused-function]
static inline uint8_t *get_run(uint8_t *ip, const uint8_t *ip_bound, const uint8_t *ref) {
^
c-blosc/blosc/blosclz.c:110:24: warning: unused function 'get_run_16' [-Wunused-function]
static inline uint8_t *get_run_16(uint8_t *ip, const uint8_t *ip_bound, const uint8_t *ref) {
^
4 warnings generated.
gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/Users/jonahcullen/miniconda3/envs/cob/include -arch x86_64 -I/Users/jonahcullen/miniconda3/envs/cob/include -arch x86_64 -DHAVE_LZ4=1 -DHAVE_SNAPPY=1 -DHAVE_ZLIB=1 -DHAVE_ZSTD=1 -Ibcolz -Ic-blosc/blosc -Ic-blosc/internal-complibs/zstd-1.3.4 -Ic-blosc/internal-complibs/lz4-1.8.1.2 -Ic-blosc/internal-complibs/snappy-1.1.1 -Ic-blosc/internal-complibs/zlib-1.2.8 -Ic-blosc/internal-complibs/zstd-1.3.4/compress -Ic-blosc/internal-complibs/zstd-1.3.4/dictBuilder -Ic-blosc/internal-complibs/zstd-1.3.4/decompress -Ic-blosc/internal-complibs/zstd-1.3.4/legacy -Ic-blosc/internal-complibs/zstd-1.3.4/common -Ic-blosc/internal-complibs/zstd-1.3.4/dll -Ic-blosc/internal-complibs/zstd-1.3.4/deprecated -I/Users/jonahcullen/miniconda3/envs/cob/lib/python3.6/site-packages/numpy/core/include -I/Users/jonahcullen/miniconda3/envs/cob/include/python3.6m -c c-blosc/blosc/shuffle-generic.c -o build/temp.macosx-10.7-x86_64-3.6/c-blosc/blosc/shuffle-generic.o -DSHUFFLE_SSE2_ENABLED -msse2 -DSHUFFLE_AVX2_ENABLED -mavx2
gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/Users/jonahcullen/miniconda3/envs/cob/include -arch x86_64 -I/Users/jonahcullen/miniconda3/envs/cob/include -arch x86_64 -DHAVE_LZ4=1 -DHAVE_SNAPPY=1 -DHAVE_ZLIB=1 -DHAVE_ZSTD=1 -Ibcolz -Ic-blosc/blosc -Ic-blosc/internal-complibs/zstd-1.3.4 -Ic-blosc/internal-complibs/lz4-1.8.1.2 -Ic-blosc/internal-complibs/snappy-1.1.1 -Ic-blosc/internal-complibs/zlib-1.2.8 -Ic-blosc/internal-complibs/zstd-1.3.4/compress -Ic-blosc/internal-complibs/zstd-1.3.4/dictBuilder -Ic-blosc/internal-complibs/zstd-1.3.4/decompress -Ic-blosc/internal-complibs/zstd-1.3.4/legacy -Ic-blosc/internal-complibs/zstd-1.3.4/common -Ic-blosc/internal-complibs/zstd-1.3.4/dll -Ic-blosc/internal-complibs/zstd-1.3.4/deprecated -I/Users/jonahcullen/miniconda3/envs/cob/lib/python3.6/site-packages/numpy/core/include -I/Users/jonahcullen/miniconda3/envs/cob/include/python3.6m -c c-blosc/internal-complibs/lz4-1.8.1.2/lz4hc.c -o build/temp.macosx-10.7-x86_64-3.6/c-blosc/internal-complibs/lz4-1.8.1.2/lz4hc.o -DSHUFFLE_SSE2_ENABLED -msse2 -DSHUFFLE_AVX2_ENABLED -mavx2
gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/Users/jonahcullen/miniconda3/envs/cob/include -arch x86_64 -I/Users/jonahcullen/miniconda3/envs/cob/include -arch x86_64 -DHAVE_LZ4=1 -DHAVE_SNAPPY=1 -DHAVE_ZLIB=1 -DHAVE_ZSTD=1 -Ibcolz -Ic-blosc/blosc -Ic-blosc/internal-complibs/zstd-1.3.4 -Ic-blosc/internal-complibs/lz4-1.8.1.2 -Ic-blosc/internal-complibs/snappy-1.1.1 -Ic-blosc/internal-complibs/zlib-1.2.8 -Ic-blosc/internal-complibs/zstd-1.3.4/compress -Ic-blosc/internal-complibs/zstd-1.3.4/dictBuilder -Ic-blosc/internal-complibs/zstd-1.3.4/decompress -Ic-blosc/internal-complibs/zstd-1.3.4/legacy -Ic-blosc/internal-complibs/zstd-1.3.4/common -Ic-blosc/internal-complibs/zstd-1.3.4/dll -Ic-blosc/internal-complibs/zstd-1.3.4/deprecated -I/Users/jonahcullen/miniconda3/envs/cob/lib/python3.6/site-packages/numpy/core/include -I/Users/jonahcullen/miniconda3/envs/cob/include/python3.6m -c c-blosc/internal-complibs/lz4-1.8.1.2/lz4.c -o build/temp.macosx-10.7-x86_64-3.6/c-blosc/internal-complibs/lz4-1.8.1.2/lz4.o -DSHUFFLE_SSE2_ENABLED -msse2 -DSHUFFLE_AVX2_ENABLED -mavx2
gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/Users/jonahcullen/miniconda3/envs/cob/include -arch x86_64 -I/Users/jonahcullen/miniconda3/envs/cob/include -arch x86_64 -DHAVE_LZ4=1 -DHAVE_SNAPPY=1 -DHAVE_ZLIB=1 -DHAVE_ZSTD=1 -Ibcolz -Ic-blosc/blosc -Ic-blosc/internal-complibs/zstd-1.3.4 -Ic-blosc/internal-complibs/lz4-1.8.1.2 -Ic-blosc/internal-complibs/snappy-1.1.1 -Ic-blosc/internal-complibs/zlib-1.2.8 -Ic-blosc/internal-complibs/zstd-1.3.4/compress -Ic-blosc/internal-complibs/zstd-1.3.4/dictBuilder -Ic-blosc/internal-complibs/zstd-1.3.4/decompress -Ic-blosc/internal-complibs/zstd-1.3.4/legacy -Ic-blosc/internal-complibs/zstd-1.3.4/common -Ic-blosc/internal-complibs/zstd-1.3.4/dll -Ic-blosc/internal-complibs/zstd-1.3.4/deprecated -I/Users/jonahcullen/miniconda3/envs/cob/lib/python3.6/site-packages/numpy/core/include -I/Users/jonahcullen/miniconda3/envs/cob/include/python3.6m -c c-blosc/internal-complibs/snappy-1.1.1/snappy-stubs-internal.cc -o build/temp.macosx-10.7-x86_64-3.6/c-blosc/internal-complibs/snappy-1.1.1/snappy-stubs-internal.o -DSHUFFLE_SSE2_ENABLED -msse2 -DSHUFFLE_AVX2_ENABLED -mavx2
warning: include path for stdlibc++ headers not found; pass '-std=libc++' on the command line to use the libc++ standard library instead [-Wstdlibcxx-not-found]
c-blosc/internal-complibs/snappy-1.1.1/snappy-stubs-internal.cc:29:10: fatal error: 'algorithm' file not found
#include
^~~~~~~~~~~
1 warning and 1 error generated.
error: command 'gcc' failed with exit status 1

ERROR: Failed building wheel for bcolz
Running setup.py clean for bcolz
Building wheel for blaze (setup.py) ... done
Stored in directory: /Users/jonahcullen/Library/Caches/pip/wheels/ee/d1/16/1011f12ce541cb352c69c6edbb81ef18020ecbcc4324d52113
Building wheel for python-Levenshtein (setup.py) ... done
Stored in directory: /Users/jonahcullen/Library/Caches/pip/wheels/de/c2/93/660fd5f7559049268ad2dc6d81c4e39e9e36518766eaf7e342
Building wheel for mpmath (setup.py) ... done
Stored in directory: /Users/jonahcullen/Library/Caches/pip/wheels/63/9d/8e/37c3f6506ed3f152733a699e92d8e0c9f5e5f01dea262f80ad
Building wheel for odo (setup.py) ... done
Stored in directory: /Users/jonahcullen/Library/Caches/pip/wheels/69/70/59/7963b5d20822afab8bd57898162a92d88f73ac5d5a21268db6
Building wheel for psutil (setup.py) ... done
Stored in directory: /Users/jonahcullen/Library/Caches/pip/wheels/90/7e/74/bb640d77775e6b6a78bcc3120f9fea4d2a28b2706de1cff37d
Building wheel for sqlalchemy (setup.py) ... done
Stored in directory: /Users/jonahcullen/Library/Caches/pip/wheels/f4/74/97/23789e1e541fb3d64dc9a921a676539695b3d184cf77f5b009
Building wheel for toolz (setup.py) ... done
Stored in directory: /Users/jonahcullen/Library/Caches/pip/wheels/f4/0c/f6/ce6b2d1aa459ee97cc3c0f82236302bd62d89c86c700219463
Building wheel for backcall (setup.py) ... done
Stored in directory: /Users/jonahcullen/Library/Caches/pip/wheels/98/b0/dd/29e28ff615af3dda4c67cab719dd51357597eabff926976b45
Building wheel for datashape (setup.py) ... done
Stored in directory: /Users/jonahcullen/Library/Caches/pip/wheels/8d/06/05/c1cba3d57bdcfd3960e3f60a9fdc97e4baef2ef09af0ad1ef8
Building wheel for googleapis-common-protos (setup.py) ... done
Stored in directory: /Users/jonahcullen/Library/Caches/pip/wheels/9e/3d/a2/1bec8bb7db80ab3216dbc33092bb7ccd0debfb8ba42b5668d5
Successfully built camoco minus80 pyyaml termcolor powerlaw blaze python-Levenshtein mpmath odo psutil sqlalchemy toolz backcall datashape googleapis-common-protos
Failed to build bcolz
Installing collected packages: click, itsdangerous, Werkzeug, MarkupSafe, Jinja2, flask, gunicorn, google-cloud, six, google-resumable-media, urllib3, idna, chardet, requests, protobuf, googleapis-common-protos, pyasn1, rsa, cachetools, pyasn1-modules, google-auth, pytz, google-api-core, google-cloud-core, google-cloud-storage, python-dateutil, pandas, bcolz, flask-cors, multipledispatch, datashape, toolz, decorator, networkx, odo, psutil, sqlalchemy, blaze, termcolor, pyyaml, asn1crypto, pycparser, cffi, cryptography, asyncssh, docutils, jmespath, botocore, s3transfer, boto3, fuzzywuzzy, python-Levenshtein, tqdm, backoff, minus80, cython, ipython-genutils, traitlets, backcall, appnope, pickleshare, ptyprocess, pexpect, parso, jedi, wcwidth, prompt-toolkit, pygments, ipython, igraph, kiwisolver, cycler, pyparsing, matplotlib, scipy, joblib, scikit-learn, patsy, statsmodels, mpmath, powerlaw, markov-clustering, fastcluster, camoco, camoco-cob
Running setup.py install for bcolz ... error
ERROR: Complete output from command /Users/jonahcullen/miniconda3/envs/cob/bin/python -u -c 'import setuptools, tokenize;file='"'"'/private/var/folders/9x/11k30prx6_56pv3g4cfy1wm80000gn/T/pip-install-pf8ikdns/bcolz/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(file);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, file, '"'"'exec'"'"'))' install --record /private/var/folders/9x/11k30prx6_56pv3g4cfy1wm80000gn/T/pip-record-wpl9529x/install-record.txt --single-version-externally-managed --compile:
ERROR: SSE2 detected
AVX2 detected
running install
running build
running build_py
creating build
creating build/lib.macosx-10.7-x86_64-3.6
creating build/lib.macosx-10.7-x86_64-3.6/bcolz
copying bcolz/py2help_tests.py -> build/lib.macosx-10.7-x86_64-3.6/bcolz
copying bcolz/version.py -> build/lib.macosx-10.7-x86_64-3.6/bcolz
copying bcolz/toplevel.py -> build/lib.macosx-10.7-x86_64-3.6/bcolz
copying bcolz/ctable.py -> build/lib.macosx-10.7-x86_64-3.6/bcolz
copying bcolz/init.py -> build/lib.macosx-10.7-x86_64-3.6/bcolz
copying bcolz/utils.py -> build/lib.macosx-10.7-x86_64-3.6/bcolz
copying bcolz/chunked_eval.py -> build/lib.macosx-10.7-x86_64-3.6/bcolz
copying bcolz/defaults.py -> build/lib.macosx-10.7-x86_64-3.6/bcolz
copying bcolz/attrs.py -> build/lib.macosx-10.7-x86_64-3.6/bcolz
copying bcolz/py2help.py -> build/lib.macosx-10.7-x86_64-3.6/bcolz
copying bcolz/arrayprint.py -> build/lib.macosx-10.7-x86_64-3.6/bcolz
creating build/lib.macosx-10.7-x86_64-3.6/bcolz/tests
copying bcolz/tests/test_ndcarray.py -> build/lib.macosx-10.7-x86_64-3.6/bcolz/tests
copying bcolz/tests/test_carray_objects.py -> build/lib.macosx-10.7-x86_64-3.6/bcolz/tests
copying bcolz/tests/test_attrs.py -> build/lib.macosx-10.7-x86_64-3.6/bcolz/tests
copying bcolz/tests/init.py -> build/lib.macosx-10.7-x86_64-3.6/bcolz/tests
copying bcolz/tests/all.py -> build/lib.macosx-10.7-x86_64-3.6/bcolz/tests
copying bcolz/tests/common.py -> build/lib.macosx-10.7-x86_64-3.6/bcolz/tests
copying bcolz/tests/test_queries.py -> build/lib.macosx-10.7-x86_64-3.6/bcolz/tests
copying bcolz/tests/test_ctable.py -> build/lib.macosx-10.7-x86_64-3.6/bcolz/tests
copying bcolz/tests/test_carray.py -> build/lib.macosx-10.7-x86_64-3.6/bcolz/tests
copying bcolz/carray_ext.pxd -> build/lib.macosx-10.7-x86_64-3.6/bcolz
running build_ext
skipping 'bcolz/carray_ext.c' Cython extension (up-to-date)
building 'bcolz.carray_ext' extension
creating build/temp.macosx-10.7-x86_64-3.6
creating build/temp.macosx-10.7-x86_64-3.6/bcolz
creating build/temp.macosx-10.7-x86_64-3.6/c-blosc
creating build/temp.macosx-10.7-x86_64-3.6/c-blosc/blosc
creating build/temp.macosx-10.7-x86_64-3.6/c-blosc/internal-complibs
creating build/temp.macosx-10.7-x86_64-3.6/c-blosc/internal-complibs/lz4-1.8.1.2
creating build/temp.macosx-10.7-x86_64-3.6/c-blosc/internal-complibs/snappy-1.1.1
creating build/temp.macosx-10.7-x86_64-3.6/c-blosc/internal-complibs/zlib-1.2.8
creating build/temp.macosx-10.7-x86_64-3.6/c-blosc/internal-complibs/zstd-1.3.4
creating build/temp.macosx-10.7-x86_64-3.6/c-blosc/internal-complibs/zstd-1.3.4/compress
creating build/temp.macosx-10.7-x86_64-3.6/c-blosc/internal-complibs/zstd-1.3.4/dictBuilder
creating build/temp.macosx-10.7-x86_64-3.6/c-blosc/internal-complibs/zstd-1.3.4/decompress
creating build/temp.macosx-10.7-x86_64-3.6/c-blosc/internal-complibs/zstd-1.3.4/legacy
creating build/temp.macosx-10.7-x86_64-3.6/c-blosc/internal-complibs/zstd-1.3.4/common
creating build/temp.macosx-10.7-x86_64-3.6/c-blosc/internal-complibs/zstd-1.3.4/deprecated
gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/Users/jonahcullen/miniconda3/envs/cob/include -arch x86_64 -I/Users/jonahcullen/miniconda3/envs/cob/include -arch x86_64 -DHAVE_LZ4=1 -DHAVE_SNAPPY=1 -DHAVE_ZLIB=1 -DHAVE_ZSTD=1 -Ibcolz -Ic-blosc/blosc -Ic-blosc/internal-complibs/zstd-1.3.4 -Ic-blosc/internal-complibs/lz4-1.8.1.2 -Ic-blosc/internal-complibs/snappy-1.1.1 -Ic-blosc/internal-complibs/zlib-1.2.8 -Ic-blosc/internal-complibs/zstd-1.3.4/compress -Ic-blosc/internal-complibs/zstd-1.3.4/dictBuilder -Ic-blosc/internal-complibs/zstd-1.3.4/decompress -Ic-blosc/internal-complibs/zstd-1.3.4/legacy -Ic-blosc/internal-complibs/zstd-1.3.4/common -Ic-blosc/internal-complibs/zstd-1.3.4/dll -Ic-blosc/internal-complibs/zstd-1.3.4/deprecated -I/Users/jonahcullen/miniconda3/envs/cob/lib/python3.6/site-packages/numpy/core/include -I/Users/jonahcullen/miniconda3/envs/cob/include/python3.6m -c bcolz/carray_ext.c -o build/temp.macosx-10.7-x86_64-3.6/bcolz/carray_ext.o -DSHUFFLE_SSE2_ENABLED -msse2 -DSHUFFLE_AVX2_ENABLED -mavx2
In file included from bcolz/carray_ext.c:525:
In file included from /Users/jonahcullen/miniconda3/envs/cob/lib/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4:
In file included from /Users/jonahcullen/miniconda3/envs/cob/lib/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:12:
In file included from /Users/jonahcullen/miniconda3/envs/cob/lib/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822:
/Users/jonahcullen/miniconda3/envs/cob/lib/python3.6/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings]
#warning "Using deprecated NumPy API, disable it with "
^
1 warning generated.
gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/Users/jonahcullen/miniconda3/envs/cob/include -arch x86_64 -I/Users/jonahcullen/miniconda3/envs/cob/include -arch x86_64 -DHAVE_LZ4=1 -DHAVE_SNAPPY=1 -DHAVE_ZLIB=1 -DHAVE_ZSTD=1 -Ibcolz -Ic-blosc/blosc -Ic-blosc/internal-complibs/zstd-1.3.4 -Ic-blosc/internal-complibs/lz4-1.8.1.2 -Ic-blosc/internal-complibs/snappy-1.1.1 -Ic-blosc/internal-complibs/zlib-1.2.8 -Ic-blosc/internal-complibs/zstd-1.3.4/compress -Ic-blosc/internal-complibs/zstd-1.3.4/dictBuilder -Ic-blosc/internal-complibs/zstd-1.3.4/decompress -Ic-blosc/internal-complibs/zstd-1.3.4/legacy -Ic-blosc/internal-complibs/zstd-1.3.4/common -Ic-blosc/internal-complibs/zstd-1.3.4/dll -Ic-blosc/internal-complibs/zstd-1.3.4/deprecated -I/Users/jonahcullen/miniconda3/envs/cob/lib/python3.6/site-packages/numpy/core/include -I/Users/jonahcullen/miniconda3/envs/cob/include/python3.6m -c c-blosc/blosc/blosc.c -o build/temp.macosx-10.7-x86_64-3.6/c-blosc/blosc/blosc.o -DSHUFFLE_SSE2_ENABLED -msse2 -DSHUFFLE_AVX2_ENABLED -mavx2
c-blosc/blosc/blosc.c:874:7: warning: unused variable 'rc' [-Wunused-variable]
int rc;
^
c-blosc/blosc/blosc.c:1656:7: warning: unused variable 'rc' [-Wunused-variable]
int rc;
^
c-blosc/blosc/blosc.c:2136:7: warning: unused variable 'rc' [-Wunused-variable]
int rc;
^
3 warnings generated.
gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/Users/jonahcullen/miniconda3/envs/cob/include -arch x86_64 -I/Users/jonahcullen/miniconda3/envs/cob/include -arch x86_64 -DHAVE_LZ4=1 -DHAVE_SNAPPY=1 -DHAVE_ZLIB=1 -DHAVE_ZSTD=1 -Ibcolz -Ic-blosc/blosc -Ic-blosc/internal-complibs/zstd-1.3.4 -Ic-blosc/internal-complibs/lz4-1.8.1.2 -Ic-blosc/internal-complibs/snappy-1.1.1 -Ic-blosc/internal-complibs/zlib-1.2.8 -Ic-blosc/internal-complibs/zstd-1.3.4/compress -Ic-blosc/internal-complibs/zstd-1.3.4/dictBuilder -Ic-blosc/internal-complibs/zstd-1.3.4/decompress -Ic-blosc/internal-complibs/zstd-1.3.4/legacy -Ic-blosc/internal-complibs/zstd-1.3.4/common -Ic-blosc/internal-complibs/zstd-1.3.4/dll -Ic-blosc/internal-complibs/zstd-1.3.4/deprecated -I/Users/jonahcullen/miniconda3/envs/cob/lib/python3.6/site-packages/numpy/core/include -I/Users/jonahcullen/miniconda3/envs/cob/include/python3.6m -c c-blosc/blosc/bitshuffle-generic.c -o build/temp.macosx-10.7-x86_64-3.6/c-blosc/blosc/bitshuffle-generic.o -DSHUFFLE_SSE2_ENABLED -msse2 -DSHUFFLE_AVX2_ENABLED -mavx2
gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/Users/jonahcullen/miniconda3/envs/cob/include -arch x86_64 -I/Users/jonahcullen/miniconda3/envs/cob/include -arch x86_64 -DHAVE_LZ4=1 -DHAVE_SNAPPY=1 -DHAVE_ZLIB=1 -DHAVE_ZSTD=1 -Ibcolz -Ic-blosc/blosc -Ic-blosc/internal-complibs/zstd-1.3.4 -Ic-blosc/internal-complibs/lz4-1.8.1.2 -Ic-blosc/internal-complibs/snappy-1.1.1 -Ic-blosc/internal-complibs/zlib-1.2.8 -Ic-blosc/internal-complibs/zstd-1.3.4/compress -Ic-blosc/internal-complibs/zstd-1.3.4/dictBuilder -Ic-blosc/internal-complibs/zstd-1.3.4/decompress -Ic-blosc/internal-complibs/zstd-1.3.4/legacy -Ic-blosc/internal-complibs/zstd-1.3.4/common -Ic-blosc/internal-complibs/zstd-1.3.4/dll -Ic-blosc/internal-complibs/zstd-1.3.4/deprecated -I/Users/jonahcullen/miniconda3/envs/cob/lib/python3.6/site-packages/numpy/core/include -I/Users/jonahcullen/miniconda3/envs/cob/include/python3.6m -c c-blosc/blosc/shuffle.c -o build/temp.macosx-10.7-x86_64-3.6/c-blosc/blosc/shuffle.o -DSHUFFLE_SSE2_ENABLED -msse2 -DSHUFFLE_AVX2_ENABLED -mavx2
In file included from c-blosc/blosc/shuffle.c:11:
c-blosc/blosc/shuffle-generic.h:32:13: warning: unused function 'shuffle_generic_inline' [-Wunused-function]
static void shuffle_generic_inline(const size_t type_size,
^
c-blosc/blosc/shuffle-generic.h:61:13: warning: unused function 'unshuffle_generic_inline' [-Wunused-function]
static void unshuffle_generic_inline(const size_t type_size,
^
2 warnings generated.
gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/Users/jonahcullen/miniconda3/envs/cob/include -arch x86_64 -I/Users/jonahcullen/miniconda3/envs/cob/include -arch x86_64 -DHAVE_LZ4=1 -DHAVE_SNAPPY=1 -DHAVE_ZLIB=1 -DHAVE_ZSTD=1 -Ibcolz -Ic-blosc/blosc -Ic-blosc/internal-complibs/zstd-1.3.4 -Ic-blosc/internal-complibs/lz4-1.8.1.2 -Ic-blosc/internal-complibs/snappy-1.1.1 -Ic-blosc/internal-complibs/zlib-1.2.8 -Ic-blosc/internal-complibs/zstd-1.3.4/compress -Ic-blosc/internal-complibs/zstd-1.3.4/dictBuilder -Ic-blosc/internal-complibs/zstd-1.3.4/decompress -Ic-blosc/internal-complibs/zstd-1.3.4/legacy -Ic-blosc/internal-complibs/zstd-1.3.4/common -Ic-blosc/internal-complibs/zstd-1.3.4/dll -Ic-blosc/internal-complibs/zstd-1.3.4/deprecated -I/Users/jonahcullen/miniconda3/envs/cob/lib/python3.6/site-packages/numpy/core/include -I/Users/jonahcullen/miniconda3/envs/cob/include/python3.6m -c c-blosc/blosc/fastcopy.c -o build/temp.macosx-10.7-x86_64-3.6/c-blosc/blosc/fastcopy.o -DSHUFFLE_SSE2_ENABLED -msse2 -DSHUFFLE_AVX2_ENABLED -mavx2
c-blosc/blosc/fastcopy.c:137:30: warning: unused function 'copy_32_bytes_aligned' [-Wunused-function]
static inline unsigned char *copy_32_bytes_aligned(unsigned char *out, const unsigned char *from) {
^
c-blosc/blosc/fastcopy.c:270:30: warning: unused function 'chunk_memcpy_32' [-Wunused-function]
static inline unsigned char *chunk_memcpy_32(unsigned char *out, const unsigned char *from, unsigned len) {
^
c-blosc/blosc/fastcopy.c:294:30: warning: unused function 'chunk_memcpy_32_unrolled' [-Wunused-function]
static inline unsigned char *chunk_memcpy_32_unrolled(unsigned char *out, const unsigned char *from, unsigned len) {
^
c-blosc/blosc/fastcopy.c:402:30: warning: unused function 'chunk_memcpy_aligned' [-Wunused-function]
static inline unsigned char *chunk_memcpy_aligned(unsigned char *out, const unsigned char *from, unsigned len) {
^
4 warnings generated.
gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/Users/jonahcullen/miniconda3/envs/cob/include -arch x86_64 -I/Users/jonahcullen/miniconda3/envs/cob/include -arch x86_64 -DHAVE_LZ4=1 -DHAVE_SNAPPY=1 -DHAVE_ZLIB=1 -DHAVE_ZSTD=1 -Ibcolz -Ic-blosc/blosc -Ic-blosc/internal-complibs/zstd-1.3.4 -Ic-blosc/internal-complibs/lz4-1.8.1.2 -Ic-blosc/internal-complibs/snappy-1.1.1 -Ic-blosc/internal-complibs/zlib-1.2.8 -Ic-blosc/internal-complibs/zstd-1.3.4/compress -Ic-blosc/internal-complibs/zstd-1.3.4/dictBuilder -Ic-blosc/internal-complibs/zstd-1.3.4/decompress -Ic-blosc/internal-complibs/zstd-1.3.4/legacy -Ic-blosc/internal-complibs/zstd-1.3.4/common -Ic-blosc/internal-complibs/zstd-1.3.4/dll -Ic-blosc/internal-complibs/zstd-1.3.4/deprecated -I/Users/jonahcullen/miniconda3/envs/cob/lib/python3.6/site-packages/numpy/core/include -I/Users/jonahcullen/miniconda3/envs/cob/include/python3.6m -c c-blosc/blosc/blosclz.c -o build/temp.macosx-10.7-x86_64-3.6/c-blosc/blosc/blosclz.o -DSHUFFLE_SSE2_ENABLED -msse2 -DSHUFFLE_AVX2_ENABLED -mavx2
c-blosc/blosc/blosclz.c:148:35: warning: comparison of integers of different signs: 'int' and 'unsigned int' [-Wsign-compare]
if (_mm256_movemask_epi8(cmp) != 0xFFFFFFFF) {
~~~~~~~~~~~~~~~~~~~~~~~~~ ^ ~~~~~~~~~~
c-blosc/blosc/blosclz.c:219:35: warning: comparison of integers of different signs: 'int' and 'unsigned int' [-Wsign-compare]
if (_mm256_movemask_epi8(cmp) != 0xFFFFFFFF) {
~~~~~~~~~~~~~~~~~~~~~~~~~ ^ ~~~~~~~~~~
c-blosc/blosc/blosclz.c:82:24: warning: unused function 'get_run' [-Wunused-function]
static inline uint8_t *get_run(uint8_t *ip, const uint8_t *ip_bound, const uint8_t *ref) {
^
c-blosc/blosc/blosclz.c:110:24: warning: unused function 'get_run_16' [-Wunused-function]
static inline uint8_t *get_run_16(uint8_t *ip, const uint8_t *ip_bound, const uint8_t *ref) {
^
4 warnings generated.
gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/Users/jonahcullen/miniconda3/envs/cob/include -arch x86_64 -I/Users/jonahcullen/miniconda3/envs/cob/include -arch x86_64 -DHAVE_LZ4=1 -DHAVE_SNAPPY=1 -DHAVE_ZLIB=1 -DHAVE_ZSTD=1 -Ibcolz -Ic-blosc/blosc -Ic-blosc/internal-complibs/zstd-1.3.4 -Ic-blosc/internal-complibs/lz4-1.8.1.2 -Ic-blosc/internal-complibs/snappy-1.1.1 -Ic-blosc/internal-complibs/zlib-1.2.8 -Ic-blosc/internal-complibs/zstd-1.3.4/compress -Ic-blosc/internal-complibs/zstd-1.3.4/dictBuilder -Ic-blosc/internal-complibs/zstd-1.3.4/decompress -Ic-blosc/internal-complibs/zstd-1.3.4/legacy -Ic-blosc/internal-complibs/zstd-1.3.4/common -Ic-blosc/internal-complibs/zstd-1.3.4/dll -Ic-blosc/internal-complibs/zstd-1.3.4/deprecated -I/Users/jonahcullen/miniconda3/envs/cob/lib/python3.6/site-packages/numpy/core/include -I/Users/jonahcullen/miniconda3/envs/cob/include/python3.6m -c c-blosc/blosc/shuffle-generic.c -o build/temp.macosx-10.7-x86_64-3.6/c-blosc/blosc/shuffle-generic.o -DSHUFFLE_SSE2_ENABLED -msse2 -DSHUFFLE_AVX2_ENABLED -mavx2
gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/Users/jonahcullen/miniconda3/envs/cob/include -arch x86_64 -I/Users/jonahcullen/miniconda3/envs/cob/include -arch x86_64 -DHAVE_LZ4=1 -DHAVE_SNAPPY=1 -DHAVE_ZLIB=1 -DHAVE_ZSTD=1 -Ibcolz -Ic-blosc/blosc -Ic-blosc/internal-complibs/zstd-1.3.4 -Ic-blosc/internal-complibs/lz4-1.8.1.2 -Ic-blosc/internal-complibs/snappy-1.1.1 -Ic-blosc/internal-complibs/zlib-1.2.8 -Ic-blosc/internal-complibs/zstd-1.3.4/compress -Ic-blosc/internal-complibs/zstd-1.3.4/dictBuilder -Ic-blosc/internal-complibs/zstd-1.3.4/decompress -Ic-blosc/internal-complibs/zstd-1.3.4/legacy -Ic-blosc/internal-complibs/zstd-1.3.4/common -Ic-blosc/internal-complibs/zstd-1.3.4/dll -Ic-blosc/internal-complibs/zstd-1.3.4/deprecated -I/Users/jonahcullen/miniconda3/envs/cob/lib/python3.6/site-packages/numpy/core/include -I/Users/jonahcullen/miniconda3/envs/cob/include/python3.6m -c c-blosc/internal-complibs/lz4-1.8.1.2/lz4hc.c -o build/temp.macosx-10.7-x86_64-3.6/c-blosc/internal-complibs/lz4-1.8.1.2/lz4hc.o -DSHUFFLE_SSE2_ENABLED -msse2 -DSHUFFLE_AVX2_ENABLED -mavx2
gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/Users/jonahcullen/miniconda3/envs/cob/include -arch x86_64 -I/Users/jonahcullen/miniconda3/envs/cob/include -arch x86_64 -DHAVE_LZ4=1 -DHAVE_SNAPPY=1 -DHAVE_ZLIB=1 -DHAVE_ZSTD=1 -Ibcolz -Ic-blosc/blosc -Ic-blosc/internal-complibs/zstd-1.3.4 -Ic-blosc/internal-complibs/lz4-1.8.1.2 -Ic-blosc/internal-complibs/snappy-1.1.1 -Ic-blosc/internal-complibs/zlib-1.2.8 -Ic-blosc/internal-complibs/zstd-1.3.4/compress -Ic-blosc/internal-complibs/zstd-1.3.4/dictBuilder -Ic-blosc/internal-complibs/zstd-1.3.4/decompress -Ic-blosc/internal-complibs/zstd-1.3.4/legacy -Ic-blosc/internal-complibs/zstd-1.3.4/common -Ic-blosc/internal-complibs/zstd-1.3.4/dll -Ic-blosc/internal-complibs/zstd-1.3.4/deprecated -I/Users/jonahcullen/miniconda3/envs/cob/lib/python3.6/site-packages/numpy/core/include -I/Users/jonahcullen/miniconda3/envs/cob/include/python3.6m -c c-blosc/internal-complibs/lz4-1.8.1.2/lz4.c -o build/temp.macosx-10.7-x86_64-3.6/c-blosc/internal-complibs/lz4-1.8.1.2/lz4.o -DSHUFFLE_SSE2_ENABLED -msse2 -DSHUFFLE_AVX2_ENABLED -mavx2
gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/Users/jonahcullen/miniconda3/envs/cob/include -arch x86_64 -I/Users/jonahcullen/miniconda3/envs/cob/include -arch x86_64 -DHAVE_LZ4=1 -DHAVE_SNAPPY=1 -DHAVE_ZLIB=1 -DHAVE_ZSTD=1 -Ibcolz -Ic-blosc/blosc -Ic-blosc/internal-complibs/zstd-1.3.4 -Ic-blosc/internal-complibs/lz4-1.8.1.2 -Ic-blosc/internal-complibs/snappy-1.1.1 -Ic-blosc/internal-complibs/zlib-1.2.8 -Ic-blosc/internal-complibs/zstd-1.3.4/compress -Ic-blosc/internal-complibs/zstd-1.3.4/dictBuilder -Ic-blosc/internal-complibs/zstd-1.3.4/decompress -Ic-blosc/internal-complibs/zstd-1.3.4/legacy -Ic-blosc/internal-complibs/zstd-1.3.4/common -Ic-blosc/internal-complibs/zstd-1.3.4/dll -Ic-blosc/internal-complibs/zstd-1.3.4/deprecated -I/Users/jonahcullen/miniconda3/envs/cob/lib/python3.6/site-packages/numpy/core/include -I/Users/jonahcullen/miniconda3/envs/cob/include/python3.6m -c c-blosc/internal-complibs/snappy-1.1.1/snappy-stubs-internal.cc -o build/temp.macosx-10.7-x86_64-3.6/c-blosc/internal-complibs/snappy-1.1.1/snappy-stubs-internal.o -DSHUFFLE_SSE2_ENABLED -msse2 -DSHUFFLE_AVX2_ENABLED -mavx2
warning: include path for stdlibc++ headers not found; pass '-std=libc++' on the command line to use the libc++ standard library instead [-Wstdlibcxx-not-found]
c-blosc/internal-complibs/snappy-1.1.1/snappy-stubs-internal.cc:29:10: fatal error: 'algorithm' file not found
#include
^~~~~~~~~~~
1 warning and 1 error generated.
error: command 'gcc' failed with exit status 1
----------------------------------------
ERROR: Command "/Users/jonahcullen/miniconda3/envs/cob/bin/python -u -c 'import setuptools, tokenize;file='"'"'/private/var/folders/9x/11k30prx6_56pv3g4cfy1wm80000gn/T/pip-install-pf8ikdns/bcolz/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(file);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, file, '"'"'exec'"'"'))' install --record /private/var/folders/9x/11k30prx6_56pv3g4cfy1wm80000gn/T/pip-record-wpl9529x/install-record.txt --single-version-externally-managed --compile" failed with error code 1 in /private/var/folders/9x/11k30prx6_56pv3g4cfy1wm80000gn/T/pip-install-pf8ikdns/bcolz/

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