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sunyangfusunyangfu
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enact delirium model update
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‎.DS_Store

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‎delirium/annotation_guideline/README.md renamed to ‎delirium/annotation_resources/README.md

‎delirium/annotation_resources/delirium_1.3.dtd

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<!ENTITY name "Delirium_schema_1_3">
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<!ELEMENT AMS ( #PCDATA ) >
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<!ATTLIST AMS CAM_criteria ( A | B | C | D | multiple | Indeterminate ) #IMPLIED >
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<!ATTLIST AMS certainty ( confirmed | hypothetical | possible | negated ) #IMPLIED "confirmed" >
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<!ATTLIST AMS status ( history | present ) #IMPLIED "present" >
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<!ATTLIST AMS experiencer ( patient | other ) #IMPLIED "patient" >
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<!ATTLIST AMS exclusion ( yes | no ) #IMPLIED "no" >
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<!ATTLIST AMS comment CDATA "" >
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<!ELEMENT Delirium ( #PCDATA ) >
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<!ATTLIST Delirium certainty ( confirmed | hypothetical | possible | negated ) #IMPLIED "confirmed" >
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<!ATTLIST Delirium status ( history | present ) #IMPLIED "present" >
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<!ATTLIST Delirium experiencer ( patient | other ) #IMPLIED "patient" >
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<!ATTLIST Delirium exclusion ( yes | no ) #IMPLIED "no" >
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<!ATTLIST Delirium comment CDATA "" >
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<!ELEMENT Hallucination ( #PCDATA ) >
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<!ATTLIST Hallucination CAM_criteria ( A | B | C | D | multiple | Indeterminate ) #IMPLIED >
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<!ATTLIST Hallucination certainty ( confirmed | hypothetical | possible | negated ) #IMPLIED "confirmed" >
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<!ATTLIST Hallucination status ( history | present ) #IMPLIED "present" >
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<!ATTLIST Hallucination experiencer ( patient | other ) #IMPLIED "patient" >
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<!ATTLIST Hallucination exclusion ( yes | no ) #IMPLIED "no" >
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<!ATTLIST Hallucination comment CDATA "" >
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<!ELEMENT Confusion ( #PCDATA ) >
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<!ATTLIST Confusion CAM_criteria ( A | B | C | D | multiple | Indeterminate ) #IMPLIED >
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<!ATTLIST Confusion certainty ( confirmed | hypothetical | possible | negated ) #IMPLIED "confirmed" >
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<!ATTLIST Confusion status ( history | present ) #IMPLIED "present" >
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<!ATTLIST Confusion experiencer ( patient | other ) #IMPLIED "patient" >
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<!ATTLIST Confusion exclusion ( yes | no ) #IMPLIED "no" >
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<!ATTLIST Confusion comment CDATA "" >
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<!ELEMENT Disorient ( #PCDATA ) >
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<!ATTLIST Disorient CAM_criteria ( A | B | C | D | multiple | Indeterminate ) #IMPLIED >
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<!ATTLIST Disorient certainty ( confirmed | hypothetical | possible | negated ) #IMPLIED "confirmed" >
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<!ATTLIST Disorient status ( history | present ) #IMPLIED "present" >
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<!ATTLIST Disorient experiencer ( patient | other ) #IMPLIED "patient" >
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<!ATTLIST Disorient exclusion ( yes | no ) #IMPLIED "no" >
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<!ATTLIST Disorient comment CDATA "" >
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<!ELEMENT Reorient ( #PCDATA ) >
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<!ATTLIST Reorient CAM_criteria ( A | B | C | D | multiple | Indeterminate ) #IMPLIED >
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<!ATTLIST Reorient certainty ( confirmed | hypothetical | possible | negated ) #IMPLIED "confirmed" >
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<!ATTLIST Reorient status ( history | present ) #IMPLIED "present" >
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<!ATTLIST Reorient experiencer ( patient | other ) #IMPLIED "patient" >
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<!ATTLIST Reorient exclusion ( yes | no ) #IMPLIED "no" >
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<!ATTLIST Reorient comment CDATA "" >
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<!ELEMENT Encephalopathy ( #PCDATA ) >
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<!ATTLIST Encephalopathy CAM_criteria ( A | B | C | D | multiple | Indeterminate ) #IMPLIED >
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<!ATTLIST Encephalopathy certainty ( confirmed | hypothetical | possible | negated ) #IMPLIED "confirmed" >
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<!ATTLIST Encephalopathy status ( history | present ) #IMPLIED "present" >
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<!ATTLIST Encephalopathy experiencer ( patient | other ) #IMPLIED "patient" >
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<!ATTLIST Encephalopathy exclusion ( yes | no ) #IMPLIED "no" >
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<!ATTLIST Encephalopathy comment CDATA "" >
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<!ELEMENT Agit ( #PCDATA ) >
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<!ATTLIST Agit CAM_criteria ( A | B | C | D | multiple | Indeterminate ) #IMPLIED >
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<!ATTLIST Agit certainty ( confirmed | hypothetical | possible | negated ) #IMPLIED "confirmed" >
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<!ATTLIST Agit status ( history | present ) #IMPLIED "present" >
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<!ATTLIST Agit experiencer ( patient | other ) #IMPLIED "patient" >
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<!ATTLIST Agit exclusion ( yes | no ) #IMPLIED "no" >
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<!ATTLIST Agit comment CDATA "" >
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<!ELEMENT Fluctu ( #PCDATA ) >
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<!ATTLIST Fluctu CAM_criteria ( A | B | C | D | multiple | Indeterminate ) #IMPLIED >
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<!ATTLIST Fluctu certainty ( confirmed | hypothetical | possible | negated ) #IMPLIED "confirmed" >
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<!ATTLIST Fluctu status ( history | present ) #IMPLIED "present" >
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<!ATTLIST Fluctu experiencer ( patient | other ) #IMPLIED "patient" >
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<!ATTLIST Fluctu exclusion ( yes | no ) #IMPLIED "no" >
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<!ATTLIST Fluctu comment CDATA "" >
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<!ELEMENT Inattention ( #PCDATA ) >
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<!ATTLIST Inattention CAM_criteria ( A | B | C | D | multiple | Indeterminate ) #IMPLIED >
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<!ATTLIST Inattention certainty ( confirmed | hypothetical | possible | negated ) #IMPLIED "confirmed" >
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<!ATTLIST Inattention status ( history | present ) #IMPLIED "present" >
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<!ATTLIST Inattention experiencer ( patient | other ) #IMPLIED "patient" >
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<!ATTLIST Inattention exclusion ( yes | no ) #IMPLIED "no" >
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<!ATTLIST Inattention comment CDATA "" >
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<!ELEMENT Disorganized_thinking ( #PCDATA ) >
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<!ATTLIST Disorganized_thinking CAM_criteria ( A | B | C | D | multiple | Indeterminate ) #IMPLIED >
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<!ATTLIST Disorganized_thinking certainty ( confirmed | hypothetical | possible | negated ) #IMPLIED "confirmed" >
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<!ATTLIST Disorganized_thinking status ( history | present ) #IMPLIED "present" >
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<!ATTLIST Disorganized_thinking experiencer ( patient | other ) #IMPLIED "patient" >
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<!ATTLIST Disorganized_thinking exclusion ( yes | no ) #IMPLIED "no" >
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<!ATTLIST Disorganized_thinking comment CDATA "" >
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<!ELEMENT Disconnected ( #PCDATA ) >
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<!ATTLIST Disconnected CAM_criteria ( A | B | C | D | multiple | Indeterminate ) #IMPLIED >
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<!ATTLIST Disconnected certainty ( confirmed | hypothetical | possible | negated ) #IMPLIED "confirmed" >
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<!ATTLIST Disconnected status ( history | present ) #IMPLIED "present" >
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<!ATTLIST Disconnected experiencer ( patient | other ) #IMPLIED "patient" >
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<!ATTLIST Disconnected exclusion ( yes | no ) #IMPLIED "no" >
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<!ATTLIST Disconnected comment CDATA "" >
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<!ELEMENT CAM_Pos ( #PCDATA ) >
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<!ATTLIST CAM_Pos certainty ( confirmed | hypothetical | possible | negated ) #IMPLIED "confirmed" >
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<!ATTLIST CAM_Pos status ( history | present ) #IMPLIED "present" >
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<!ATTLIST CAM_Pos experiencer ( patient | other ) #IMPLIED "patient" >
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<!ATTLIST CAM_Pos exclusion ( yes | no ) #IMPLIED "no" >
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<!ATTLIST CAM_Pos comment CDATA "" >
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<!ELEMENT Definition ( #PCDATA ) >
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<!ATTLIST Definition category ( definitive_delirium | possible_delirium | no_delirium ) #IMPLIED "" >
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<!ATTLIST Definition comment CDATA "" >

‎delirium/annotation_guideline/glaa275_suppl_supplementary_materials_1.docx renamed to ‎delirium/annotation_resources/glaa275_suppl_supplementary_materials_1.docx

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‎delirium/data/.DS_Store

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‎delirium/data/input/.DS_Store

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‎delirium/input/patientID_documentID_documentDate.txt renamed to ‎delirium/data/input/patientID001_documentID123_documentDate010223.txt

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‎delirium/data/medtator/patientID001_documentID123_documentDate010223.txt.xml

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<Delirium_schema_1_3>
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<TEXT><![CDATA[This paitient has delirium due to agitation, confusion, disorganized thinking.]]></TEXT>
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<TAGS>
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<Delirium text="delirium" spans="18~26" certainty="positive" status="present" experiencer="patient" id="DE0" exclusion="" comment=""/>
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<Agit text="agitation" spans="34~43" certainty="positive" status="present" experiencer="patient" id="AG1" exclusion="" comment=""/>
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<Confusion text="confusion" spans="45~54" certainty="positive" status="present" experiencer="patient" id="CO2" exclusion="" comment=""/>
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<Disorganized_thinking text="disorganized" spans="56~68" certainty="positive" status="present" experiencer="patient" id="DI3" exclusion="" comment=""/>
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</TAGS>
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</Delirium_schema_1_3>

‎delirium/data/output/.DS_Store

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