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Edited which output files we compress in export.sh
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work/export.sh

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@@ -14,7 +14,8 @@ $JAVA_HOME/bin/java -Xmx64g -Dpaxtools.CollectionProvider=org.biopax.paxtools.tr
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cat physical_entities.json | jq -cS 'map(select(.generic)) | reduce .[] as $o ({}; . + {($o.uri): {name: $o.name, label:$o.label, synonyms:$o."hgnc.symbol"}})' > generic-physical-entity-map.json
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rename 's/txt\.sif/sif/' *.txt.sif
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gzip *.txt *.sif *.gmt physical_entities.json
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#compress the generated files except: blacklist.txt, generic-physical-entity-map.json
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gzip pc-*.sif pc-*.gmt pc-*.txt datasources.txt pathways.txt uniprot.txt physical_entities.json
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cd ..
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echo "export.sh completed."

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