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Merge pull request #5 from ararslan/aa/ci
Update CI setup and GitHub organization references
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‎.github/workflows/ci.yml

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name: Unit Tests
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# Controls when the action will run. Triggers the workflow on push or pull request
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# events but only for the master branch
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on:
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pull_request:
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name: Unit Tests
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on:
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push:
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branches: [main]
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tags: ["*"]
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pull_request:
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workflow_dispatch:
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permissions:
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actions: write
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contents: read
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env:
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DATADEPS_ALWAYS_ACCEPT: 1
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JIVE_PROCS: 1
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jobs:
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build:
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runs-on: ubuntu-20.04
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test:
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name: Julia ${{ matrix.version }} - ${{ matrix.os }} - ${{ matrix.arch }} - ${{ github.event_name }}
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runs-on: ${{ matrix.os }}
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strategy:
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fail-fast: false
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matrix:
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version:
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- '1.6'
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- '1'
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- 'nightly'
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os:
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- ubuntu-latest
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arch:
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- x64
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steps:
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- uses: actions/checkout@v2
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- uses: julia-actions/setup-julia@latest
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- uses: actions/checkout@v4
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- uses: julia-actions/setup-julia@v2
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with:
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version: 1.6
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# Runs a single command using the runners shell
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- name: Unit Tests
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run: |
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julia --project -e 'using Pkg; Pkg.instantiate(); Pkg.build();'
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julia --project --check-bounds=yes --depwarn=yes -e 'import Pkg; Pkg.test(; coverage=true)'
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- name: Codecov Upload
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run: |
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julia -e 'using Pkg; Pkg.add("Coverage"); using Coverage; Codecov.submit(process_folder());'
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version: ${{ matrix.version }}
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arch: ${{ matrix.arch }}
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- uses: julia-actions/cache@v1
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- uses: julia-actions/julia-buildpkg@v1
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- uses: julia-actions/julia-runtest@v1
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- uses: julia-actions/julia-processcoverage@v1
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- uses: codecov/codecov-action@v2
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with:
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file: lcov.info
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docs:
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name: Documentation
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runs-on: ubuntu-latest
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steps:
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- uses: actions/checkout@v4
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- uses: julia-actions/julia-buildpkg@latest
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- uses: julia-actions/julia-docdeploy@latest
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env:
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GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
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DOCUMENTER_KEY: ${{ secrets.DOCUMENTER_KEY }}

‎.github/workflows/compathelper.yml

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on:
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schedule:
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- cron: '0 0 */7 * *'
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workflow_dispatch:
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permissions:
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contents: write
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pull-requests: write
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jobs:
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CompatHelper:
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runs-on: ubuntu-latest
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steps:
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- name: Pkg.add("CompatHelper")
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run: julia -e 'using Pkg; Pkg.add("CompatHelper")'
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- name: CompatHelper.main()
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env:
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GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
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COMPATHELPER_PRIV: ${{ secrets.DOCUMENTER_KEY }}
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run: julia -e 'using CompatHelper; CompatHelper.main()'

‎.github/workflows/deploy_docs.yml

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‎.github/workflows/tagbot.yml

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name: TagBot
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on:
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issue_comment: # THIS BIT IS NEW
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issue_comment:
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types:
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- created
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workflow_dispatch:
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inputs:
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lookback:
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default: 3
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permissions:
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actions: read
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checks: read
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contents: write
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deployments: read
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issues: read
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discussions: read
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packages: read
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pages: read
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pull-requests: read
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repository-projects: read
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security-events: read
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statuses: read
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jobs:
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TagBot:
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if: github.event_name == 'workflow_dispatch' || github.actor == 'JuliaTagBot'

‎README.md

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# DirectedAcyclicGraphs.jl
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[![Unit Tests](https://github.com/Juice-jl/DirectedAcyclicGraphs.jl/workflows/Unit%20Tests/badge.svg)](https://github.com/Juice-jl/DirectedAcyclicGraphs.jl/actions?query=workflow%3A%22Unit+Tests%22+branch%3Amain) [![codecov](https://codecov.io/gh/Juice-jl/DirectedAcyclicGraphs.jl/branch/main/graph/badge.svg)](https://codecov.io/gh/Juice-jl/DirectedAcyclicGraphs.jl) [![](https://img.shields.io/badge/docs-dev-blue.svg)](https://juice-jl.github.io/DirectedAcyclicGraphs.jl/dev/)
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[![Unit Tests](https://github.com/Tractables/DirectedAcyclicGraphs.jl/workflows/Unit%20Tests/badge.svg)](https://github.com/Tractables/DirectedAcyclicGraphs.jl/actions?query=workflow%3A%22Unit+Tests%22+branch%3Amain) [![codecov](https://codecov.io/gh/Tractables/DirectedAcyclicGraphs.jl/branch/main/graph/badge.svg)](https://codecov.io/gh/Tractables/DirectedAcyclicGraphs.jl) [![](https://img.shields.io/badge/docs-dev-blue.svg)](https://Tractables.github.io/DirectedAcyclicGraphs.jl/dev/)
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This package provides basic infrastructure to work with [Directed Acyclic Graphs](https://en.wikipedia.org/wiki/Directed_acyclic_graph) (DAGs) in Julia.
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It forms the foundation for packages such as [LogicCircuits](https://github.com/Juice-jl/LogicCircuits.jl) and [ProbabilisticCircuits](https://github.com/Juice-jl/ProbabilisticCircuits.jl), which define custom DAGs that represent logical or probabilistic computation graphs.
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It forms the foundation for packages such as [LogicCircuits](https://github.com/Tractables/LogicCircuits.jl) and [ProbabilisticCircuits](https://github.com/Tractables/ProbabilisticCircuits.jl), which define custom DAGs that represent logical or probabilistic computation graphs.
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Functionality includes:
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* applying `foreach` over the nodes of the DAG in topological or reverse topological order, linearize the DAG
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* arrange the DAG nodes in feedforward layers
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* collecting various statistics about the types of nodes and their in/out-degree
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For example usage, please see the unit tests for [DAGs](https://github.com/Juice-jl/DirectedAcyclicGraphs.jl/blob/main/test/dags_test.jl) and the special case of [trees](https://github.com/Juice-jl/DirectedAcyclicGraphs.jl/blob/main/test/trees_test.jl), or the source code of the dependent packages. A brief description of functions can be found in the [![](https://img.shields.io/badge/docs-dev-blue.svg)](https://juice-jl.github.io/DirectedAcyclicGraphs.jl/dev/).
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For example usage, please see the unit tests for [DAGs](https://github.com/Tractables/DirectedAcyclicGraphs.jl/blob/main/test/dags_test.jl) and the special case of [trees](https://github.com/Tractables/DirectedAcyclicGraphs.jl/blob/main/test/trees_test.jl), or the source code of the dependent packages. A brief description of functions can be found in the [![](https://img.shields.io/badge/docs-dev-blue.svg)](https://Tractables.github.io/DirectedAcyclicGraphs.jl/dev/).

‎docs/make.jl

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format = Documenter.HTML(
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prettyurls = !("local" in ARGS),
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canonical = "https://juice-jl.github.io/DirectedAcyclicGraphs.jl/stable/",
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canonical = "https://tractables.github.io/DirectedAcyclicGraphs.jl/stable/",
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assets = ["assets/favicon.ico"],
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analytics = "UA-136089579-2",
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highlights = ["yaml"],
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# for more information.
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deploydocs(
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target = "build",
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repo = "github.com/Juice-jl/DirectedAcyclicGraphs.jl.git",
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repo = "github.com/Tractables/DirectedAcyclicGraphs.jl.git",
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branch = "gh-pages",
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devbranch = "main",
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devurl = "dev",

‎docs/src/installation.md

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To install the package with the latest commits on master branch, run:
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```bash
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julia -e 'using Pkg; Pkg.add(PackageSpec(url="https://github.com/Juice-jl/DirectedAcyclicGraphs.jl.git"))'
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julia -e 'using Pkg; Pkg.add(PackageSpec(url="https://github.com/Tractables/DirectedAcyclicGraphs.jl.git"))'
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```
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#### From Julia Pkg REPL

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