Updated docs

Author: asntech

docs/examples.rst

@@ -13,7 +13,7 @@ In this example, a 3-way Venn diagram of ChIP-seq peaks of histone modifications
     intervene venn -i ~/ENCODE/data/H3K27ac.bed ~/ENCODE/data/H3Kme3.bed ~/ENCODE/data/H3K27me3.bed --filenames
 
 .. figure:: img/venn3way.png
-   :height: 400px
+   :height: 200px
    :alt: 3-way Venn diagram
    :align: center
 
@@ -65,7 +65,7 @@ In this example, we performed a pairwise intersections of super-enhancers in 24
     intervene pairwise -i ~/dbSUPER/mm9/*.bed --filenames --compute frac --htype pie
 
 .. figure:: img/pairwise_pie.png
-   :height: 600px
+   :height: 500px
    :alt: Pairwise heatmap
    :align: center
 
@@ -76,7 +76,7 @@ By setting the ``--htype`` to ``color`` will produce this plot.
     intervene pairwise -i ~/dbSUPER/mm9/*.bed --filenames --compute frac --htype color
 
 .. figure:: img/pairwise_color.png
-   :height: 600px
+   :height: 500px
    :alt: Pairwise heatmap
    :align: center
 
@@ -87,7 +87,7 @@ By setting the ``--htype`` to ``tribar`` will produce a triangular heatmap and w
     intervene pairwise -i ~/dbSUPER/mm9/*.bed --filenames --compute frac --htype tribar
 
 .. figure:: img/pairwise_tribar.png
-   :height: 600px
+   :height: 500px
    :alt: Pairwise heatmap
    :align: center
 

docs/shinyapp.rst

@@ -7,9 +7,8 @@ Introduction
 Intervene Shiny App provides an interactive interface for intersection and effective visualization of gene or genomic region sets. Currently, Shiny app does not acccept genomic regions as input, but the text files generated by Interve's command line interface can be easily uploaded to further explore and customize the plots in an interactive way. Intervene has three modules: venn to generate Venn diagrams of up-to 6 sets, upset to generate UpSet plots of more than 3 sets and pairwise to compute and visualize pariwise intersections as clustered heatmap.
 
 .. figure:: img/shinyapp_main.png
-   :height: 600px
    :alt: Interactive Shiny App
-   :align: center
+
 
 Venn module
 ===========