Added fontsize option to venn module

Author: asntech

README.rst

@@ -86,7 +86,7 @@ If you have `git` installed, use this:
 
     git clone https://bitbucket.org/CBGR/intervene.git
     cd intervene
-    python setup.py install
+    python setup.py sdist install
 
 Install development version from `GitHub`
 -----------------------------------------
@@ -96,7 +96,7 @@ If you have `git` installed, use this:
 
     git clone https://github.com/asntech/intervene.git
     cd intervene
-    python setup.py install
+    python setup.py sdist install
 
 How to use Intervene
 ====================

docs/install.rst

@@ -82,7 +82,7 @@ If you have `git` installed, use this:
 
     git clone https://bitbucket.org/CBGR/intervene.git
     cd intervene
-    python setup.py install
+    python setup.py sdist install
 
 
 

docs/modules.rst

@@ -50,6 +50,7 @@ This will save the results in the current working directory with a folder named
 	 "-o, --output","Output folder path where results will be stored. Default is current working directory."
 	 "--figtype","{pdf,svg,ps,tiff,png} Figure type for the plot. e.g. --figtype svg. Default is ``pdf``"
 	 "--figsize","Figure size as width and height.e.g. --figsize 12 12."
+	 "--fontsize","Font size for the plot labels. Default is ``14``"
 	 "--dpi","Dots-per-inch (DPI) for the output. Default is: ``300``"
 	 "--fill","{number,percentage} Report number or  percentage of overlaps (Only if --type=list). Default is ``number``"
 	 "--test","This will run the program on test data."

intervene/intervene

@@ -64,7 +64,11 @@ def main():
                        'e.g. --figtype svg. Default is "%(default)s"\n\n')    
     venn_parser.add_argument('--figsize',  nargs=2, type=int, default=(12,12),
                    help='Figure size as width and height.'
-                       'e.g. --figsize 12 12.\n\n')    
+                       'e.g. --figsize 12 12.\n\n') 
+    venn_parser.add_argument('--fontsize', dest='fontsize', type=int, default=14,
+                   help='Font size for the plot labels.'
+                       'Default is: "%(default)s"\n\n')  
+      
     venn_parser.add_argument('--dpi', type=int, default=300,
                   help='Dots-per-inch (DPI) for the output. '
                        'Default is: "%(default)s"\n\n')  
@@ -408,12 +412,12 @@ def main():
             #create an RScript
             upset.create_r_script(labels, label_names, options)
           else:
-            fig, ax = list_venn.venn2(labels, names=label_names, dpi=options.dpi, colors=options.colors,  figsize=options.figsize)
+            fig, ax = list_venn.venn2(labels, names=label_names, dpi=options.dpi, colors=options.colors,  figsize=options.figsize, fontsize=options.fontsize)
 
         #else input considered as bed file
         else:
           labels = upset.genomic_upset(options.input)
-          fig, ax = list_venn.venn2(labels, names=label_names, dpi=options.dpi, colors=options.colors,  figsize=options.figsize)
+          fig, ax = list_venn.venn2(labels, names=label_names, dpi=options.dpi, colors=options.colors,  figsize=options.figsize, fontsize=options.fontsize)
 
           #fig, ax = genomic_venn.venn2(input_files=options.input,
           #      options=options, names=label_names, plot_type=plot_type)     
@@ -438,11 +442,11 @@ def main():
             upset.create_r_script(labels, label_names, options)
 
           else:
-            fig, ax = list_venn.venn3(labels, names=label_names, dpi=options.dpi, colors=options.colors,  figsize=options.figsize)          
+            fig, ax = list_venn.venn3(labels, names=label_names, dpi=options.dpi, colors=options.colors,  figsize=options.figsize, fontsize=options.fontsize)          
         #else input considered as bed file
         else:
           labels = upset.genomic_upset(options.input)
-          fig, ax = list_venn.venn3(labels, names=label_names, dpi=options.dpi, colors=options.colors,  figsize=options.figsize)
+          fig, ax = list_venn.venn3(labels, names=label_names, dpi=options.dpi, colors=options.colors,  figsize=options.figsize, fontsize=options.fontsize)
 
           #fig, ax = genomic_venn.venn3(input_files=options.input, options=options, names=label_names, plot_type=plot_type)
 
@@ -468,12 +472,12 @@ def main():
             upset.create_r_script(labels, label_names, options)
 
           else:
-            fig, ax = list_venn.venn4(labels, names=label_names, dpi=options.dpi, colors=options.colors,  figsize=options.figsize)
+            fig, ax = list_venn.venn4(labels, names=label_names, dpi=options.dpi, colors=options.colors,  figsize=options.figsize, fontsize=options.fontsize)
 
         #else input considered as bed file
         else:
           labels = upset.genomic_upset(options.input)
-          fig, ax = list_venn.venn4(labels, names=label_names, dpi=options.dpi, colors=options.colors,  figsize=options.figsize)
+          fig, ax = list_venn.venn4(labels, names=label_names, dpi=options.dpi, colors=options.colors,  figsize=options.figsize, fontsize=options.fontsize)
           #fig, ax = genomic_venn.venn4(input_files=options.input, options=options, names=label_names, plot_type=plot_type)
 
 
@@ -501,11 +505,11 @@ def main():
             upset.create_r_script(labels, label_names, options)
 
           else:
-            fig, ax = list_venn.venn5(labels, names=label_names, dpi=options.dpi, colors=options.colors,  figsize=options.figsize)
+            fig, ax = list_venn.venn5(labels, names=label_names, dpi=options.dpi, colors=options.colors,  figsize=options.figsize, fontsize=options.fontsize)
         #else input considered as genomic regions file
         else:
             labels = upset.genomic_upset(options.input)
-            fig, ax = list_venn.venn5(labels, names=label_names, dpi=options.dpi, colors=options.colors,  figsize=options.figsize)
+            fig, ax = list_venn.venn5(labels, names=label_names, dpi=options.dpi, colors=options.colors,  figsize=options.figsize, fontsize=options.fontsize)
             #fig, ax = genomic_venn.venn5(input_files=options.input, options=options, names=label_names, plot_type=plot_type)
 
     elif helpers.venn_order(options.input) == 6:
@@ -532,12 +536,12 @@ def main():
             #create an RScript
             upset.create_r_script(labels, label_names, options)
           else:
-            fig, ax = list_venn.venn6(labels, names=label_names, dpi=options.dpi, colors=options.colors,  figsize=options.figsize)
+            fig, ax = list_venn.venn6(labels, names=label_names, dpi=options.dpi, colors=options.colors,  figsize=options.figsize, fontsize=options.fontsize)
 
         #else input considered as bed file
         else:
             labels = upset.genomic_upset(options.input)
-            fig, ax = list_venn.venn6(labels, names=label_names, dpi=options.dpi, colors=options.colors,  figsize=options.figsize)
+            fig, ax = list_venn.venn6(labels, names=label_names, dpi=options.dpi, colors=options.colors,  figsize=options.figsize, fontsize=options.fontsize)
             #fig, ax = genomic_venn.venn6(input_files=options.input,options=options, names=label_names, plot_type=plot_type)
 
     else: