Publish mmstudio/latest

Author: github-actions[bot]

deprecated-list.html

@@ -186,13 +186,13 @@ <h2 title="Contents">Contents</h2>
 </td>
 </tr>
 <tr class="altColor">
-<td class="colOne"><a href="org/micromanager/acquisition/SequenceSettings.html#channelGroup">org.micromanager.acquisition.SequenceSettings.channelGroup</a>
-<div class="block"><span class="deprecationComment">use Builder and channelGroup() instead</span></div>
+<td class="colOne"><a href="org/micromanager/acquisition/ChannelSpec.html#channelGroup">org.micromanager.acquisition.ChannelSpec.channelGroup</a>
+<div class="block"><span class="deprecationComment">Use Builder and getters instead</span></div>
 </td>
 </tr>
 <tr class="rowColor">
-<td class="colOne"><a href="org/micromanager/acquisition/ChannelSpec.html#channelGroup">org.micromanager.acquisition.ChannelSpec.channelGroup</a>
-<div class="block"><span class="deprecationComment">Use Builder and getters instead</span></div>
+<td class="colOne"><a href="org/micromanager/acquisition/SequenceSettings.html#channelGroup">org.micromanager.acquisition.SequenceSettings.channelGroup</a>
+<div class="block"><span class="deprecationComment">use Builder and channelGroup() instead</span></div>
 </td>
 </tr>
 <tr class="altColor">
@@ -404,15 +404,6 @@ <h2 title="Contents">Contents</h2>
 </td>
 </tr>
 <tr class="rowColor">
-<td class="colOne"><a href="org/micromanager/PropertyMap.html#copy--">org.micromanager.PropertyMap.copy()</a></td>
-</tr>
-<tr class="altColor">
-<td class="colOne"><a href="org/micromanager/acquisition/SequenceSettings.html#copy--">org.micromanager.acquisition.SequenceSettings.copy()</a>
-<div class="block"><span class="deprecationComment">When used correctly, SequenceSettings are immutable.
-     If you really need a copy, use copyBuilder().build();</span></div>
-</td>
-</tr>
-<tr class="rowColor">
 <td class="colOne"><a href="org/micromanager/data/Metadata.html#copy--">org.micromanager.data.Metadata.copy()</a>
 <div class="block"><span class="deprecationComment">Use the appropriate of the following:
      <a href="org/micromanager/data/Metadata.html#copyBuilderPreservingUUID--"><code>Metadata.copyBuilderPreservingUUID()</code></a>, <a href="org/micromanager/data/Metadata.html#copyBuilderWithNewUUID--"><code>Metadata.copyBuilderWithNewUUID()</code></a>,
@@ -431,8 +422,17 @@ <h2 title="Contents">Contents</h2>
 </td>
 </tr>
 <tr class="altColor">
+<td class="colOne"><a href="org/micromanager/PropertyMap.html#copy--">org.micromanager.PropertyMap.copy()</a></td>
+</tr>
+<tr class="rowColor">
 <td class="colOne"><a href="org/micromanager/display/DisplaySettings.html#copy--">org.micromanager.display.DisplaySettings.copy()</a></td>
 </tr>
+<tr class="altColor">
+<td class="colOne"><a href="org/micromanager/acquisition/SequenceSettings.html#copy--">org.micromanager.acquisition.SequenceSettings.copy()</a>
+<div class="block"><span class="deprecationComment">When used correctly, SequenceSettings are immutable.
+     If you really need a copy, use copyBuilder().build();</span></div>
+</td>
+</tr>
 <tr class="rowColor">
 <td class="colOne"><a href="org/micromanager/data/DataManager.html#createCoords-java.lang.String-">org.micromanager.data.DataManager.createCoords(String)</a>
 <div class="block"><span class="deprecationComment">use of Strings for Coords is discouraged</span></div>

org/micromanager/class-use/PropertyMap.html

@@ -140,29 +140,29 @@ <h3>Uses of <a href="../../../org/micromanager/PropertyMap.html" title="interfac
 </td>
 </tr>
 <tr class="altColor">
-<td class="colFirst"><code><a href="../../../org/micromanager/PropertyMap.html" title="interface in org.micromanager">PropertyMap</a></code></td>
-<td class="colLast"><span class="typeNameLabel">PropertyManager.</span><code><span class="memberNameLink"><a href="../../../org/micromanager/PropertyManager.html#emptyPropertyMap--">emptyPropertyMap</a></span>()</code>
-<div class="block">Returns an empty property map.</div>
-</td>
-</tr>
-<tr class="rowColor">
 <td class="colFirst"><code>static <a href="../../../org/micromanager/PropertyMap.html" title="interface in org.micromanager">PropertyMap</a></code></td>
 <td class="colLast"><span class="typeNameLabel">PropertyMaps.</span><code><span class="memberNameLink"><a href="../../../org/micromanager/PropertyMaps.html#emptyPropertyMap--">emptyPropertyMap</a></span>()</code>
 <div class="block">Return the empty property map.</div>
 </td>
 </tr>
-<tr class="altColor">
+<tr class="rowColor">
 <td class="colFirst"><code><a href="../../../org/micromanager/PropertyMap.html" title="interface in org.micromanager">PropertyMap</a></code></td>
-<td class="colLast"><span class="typeNameLabel">PropertyManager.</span><code><span class="memberNameLink"><a href="../../../org/micromanager/PropertyManager.html#fromJSON-java.lang.String-">fromJSON</a></span>(java.lang.String&nbsp;json)</code>
-<div class="block">Creates a property map from its JSON-serialized form.</div>
+<td class="colLast"><span class="typeNameLabel">PropertyManager.</span><code><span class="memberNameLink"><a href="../../../org/micromanager/PropertyManager.html#emptyPropertyMap--">emptyPropertyMap</a></span>()</code>
+<div class="block">Returns an empty property map.</div>
 </td>
 </tr>
-<tr class="rowColor">
+<tr class="altColor">
 <td class="colFirst"><code>static <a href="../../../org/micromanager/PropertyMap.html" title="interface in org.micromanager">PropertyMap</a></code></td>
 <td class="colLast"><span class="typeNameLabel">PropertyMaps.</span><code><span class="memberNameLink"><a href="../../../org/micromanager/PropertyMaps.html#fromJSON-java.lang.String-">fromJSON</a></span>(java.lang.String&nbsp;json)</code>
 <div class="block">Create a property map from its JSON-serialized form.</div>
 </td>
 </tr>
+<tr class="rowColor">
+<td class="colFirst"><code><a href="../../../org/micromanager/PropertyMap.html" title="interface in org.micromanager">PropertyMap</a></code></td>
+<td class="colLast"><span class="typeNameLabel">PropertyManager.</span><code><span class="memberNameLink"><a href="../../../org/micromanager/PropertyManager.html#fromJSON-java.lang.String-">fromJSON</a></span>(java.lang.String&nbsp;json)</code>
+<div class="block">Creates a property map from its JSON-serialized form.</div>
+</td>
+</tr>
 <tr class="altColor">
 <td class="colFirst"><code><a href="../../../org/micromanager/PropertyMap.html" title="interface in org.micromanager">PropertyMap</a></code></td>
 <td class="colLast"><span class="typeNameLabel">PropertyMap.</span><code><span class="memberNameLink"><a href="../../../org/micromanager/PropertyMap.html#getPropertyMap-java.lang.String-">getPropertyMap</a></span>(java.lang.String&nbsp;key)</code>
@@ -175,14 +175,14 @@ <h3>Uses of <a href="../../../org/micromanager/PropertyMap.html" title="interfac
               <a href="../../../org/micromanager/PropertyMap.html" title="interface in org.micromanager">PropertyMap</a>&nbsp;aDefault)</code>&nbsp;</td>
 </tr>
 <tr class="altColor">
-<td class="colFirst"><code><a href="../../../org/micromanager/PropertyMap.html" title="interface in org.micromanager">PropertyMap</a></code></td>
-<td class="colLast"><span class="typeNameLabel">PropertyManager.</span><code><span class="memberNameLink"><a href="../../../org/micromanager/PropertyManager.html#loadJSON-java.io.File-">loadJSON</a></span>(java.io.File&nbsp;file)</code>
+<td class="colFirst"><code>static <a href="../../../org/micromanager/PropertyMap.html" title="interface in org.micromanager">PropertyMap</a></code></td>
+<td class="colLast"><span class="typeNameLabel">PropertyMaps.</span><code><span class="memberNameLink"><a href="../../../org/micromanager/PropertyMaps.html#loadJSON-java.io.File-">loadJSON</a></span>(java.io.File&nbsp;file)</code>
 <div class="block">Create a property map from its JSON-serialized form stored in a file.</div>
 </td>
 </tr>
 <tr class="rowColor">
-<td class="colFirst"><code>static <a href="../../../org/micromanager/PropertyMap.html" title="interface in org.micromanager">PropertyMap</a></code></td>
-<td class="colLast"><span class="typeNameLabel">PropertyMaps.</span><code><span class="memberNameLink"><a href="../../../org/micromanager/PropertyMaps.html#loadJSON-java.io.File-">loadJSON</a></span>(java.io.File&nbsp;file)</code>
+<td class="colFirst"><code><a href="../../../org/micromanager/PropertyMap.html" title="interface in org.micromanager">PropertyMap</a></code></td>
+<td class="colLast"><span class="typeNameLabel">PropertyManager.</span><code><span class="memberNameLink"><a href="../../../org/micromanager/PropertyManager.html#loadJSON-java.io.File-">loadJSON</a></span>(java.io.File&nbsp;file)</code>
 <div class="block">Create a property map from its JSON-serialized form stored in a file.</div>
 </td>
 </tr>
@@ -200,14 +200,14 @@ <h3>Uses of <a href="../../../org/micromanager/PropertyMap.html" title="interfac
 </tr>
 <tr class="altColor">
 <td class="colFirst"><code><a href="../../../org/micromanager/PropertyMap.html" title="interface in org.micromanager">PropertyMap</a></code></td>
-<td class="colLast"><span class="typeNameLabel">StagePosition.</span><code><span class="memberNameLink"><a href="../../../org/micromanager/StagePosition.html#toPropertyMap--">toPropertyMap</a></span>()</code>
-<div class="block">Returns this StagePosition instance as a PropertyMap.</div>
+<td class="colLast"><span class="typeNameLabel">PositionList.</span><code><span class="memberNameLink"><a href="../../../org/micromanager/PositionList.html#toPropertyMap--">toPropertyMap</a></span>()</code>
+<div class="block">Creates a PropertyMap from this PositionList.</div>
 </td>
 </tr>
 <tr class="rowColor">
 <td class="colFirst"><code><a href="../../../org/micromanager/PropertyMap.html" title="interface in org.micromanager">PropertyMap</a></code></td>
-<td class="colLast"><span class="typeNameLabel">PositionList.</span><code><span class="memberNameLink"><a href="../../../org/micromanager/PositionList.html#toPropertyMap--">toPropertyMap</a></span>()</code>
-<div class="block">Creates a PropertyMap from this PositionList.</div>
+<td class="colLast"><span class="typeNameLabel">StagePosition.</span><code><span class="memberNameLink"><a href="../../../org/micromanager/StagePosition.html#toPropertyMap--">toPropertyMap</a></span>()</code>
+<div class="block">Returns this StagePosition instance as a PropertyMap.</div>
 </td>
 </tr>
 </tbody>

org/micromanager/data/class-use/Coords.html

@@ -252,14 +252,14 @@ <h3>Uses of <a href="../../../../org/micromanager/data/Coords.html" title="inter
 </tr>
 <tr class="rowColor">
 <td class="colFirst"><code>void</code></td>
-<td class="colLast"><span class="typeNameLabel">RewritableDatastore.</span><code><span class="memberNameLink"><a href="../../../../org/micromanager/data/RewritableDatastore.html#deleteImage-org.micromanager.data.Coords-">deleteImage</a></span>(<a href="../../../../org/micromanager/data/Coords.html" title="interface in org.micromanager.data">Coords</a>&nbsp;coords)</code>
-<div class="block">Delete an image from the Datastore.</div>
+<td class="colLast"><span class="typeNameLabel">RewritableStorage.</span><code><span class="memberNameLink"><a href="../../../../org/micromanager/data/RewritableStorage.html#deleteImage-org.micromanager.data.Coords-">deleteImage</a></span>(<a href="../../../../org/micromanager/data/Coords.html" title="interface in org.micromanager.data">Coords</a>&nbsp;coords)</code>
+<div class="block">Delete an image from the Storage.</div>
 </td>
 </tr>
 <tr class="altColor">
 <td class="colFirst"><code>void</code></td>
-<td class="colLast"><span class="typeNameLabel">RewritableStorage.</span><code><span class="memberNameLink"><a href="../../../../org/micromanager/data/RewritableStorage.html#deleteImage-org.micromanager.data.Coords-">deleteImage</a></span>(<a href="../../../../org/micromanager/data/Coords.html" title="interface in org.micromanager.data">Coords</a>&nbsp;coords)</code>
-<div class="block">Delete an image from the Storage.</div>
+<td class="colLast"><span class="typeNameLabel">RewritableDatastore.</span><code><span class="memberNameLink"><a href="../../../../org/micromanager/data/RewritableDatastore.html#deleteImage-org.micromanager.data.Coords-">deleteImage</a></span>(<a href="../../../../org/micromanager/data/Coords.html" title="interface in org.micromanager.data">Coords</a>&nbsp;coords)</code>
+<div class="block">Delete an image from the Datastore.</div>
 </td>
 </tr>
 <tr class="rowColor">
@@ -384,14 +384,14 @@ <h3>Uses of <a href="../../../../org/micromanager/data/Coords.html" title="inter
 <tbody>
 <tr class="altColor">
 <td class="colFirst"><code><a href="../../../../org/micromanager/data/Coords.html" title="interface in org.micromanager.data">Coords</a></code></td>
-<td class="colLast"><span class="typeNameLabel">DisplayPositionChangedEvent.</span><code><span class="memberNameLink"><a href="../../../../org/micromanager/display/DisplayPositionChangedEvent.html#getDisplayPosition--">getDisplayPosition</a></span>()</code>
-<div class="block">returns the new display position.</div>
+<td class="colLast"><span class="typeNameLabel">AbstractDataViewer.</span><code><span class="memberNameLink"><a href="../../../../org/micromanager/display/AbstractDataViewer.html#getDisplayPosition--">getDisplayPosition</a></span>()</code>
+<div class="block">Implements <code>getDisplayPosition</code>.</div>
 </td>
 </tr>
 <tr class="rowColor">
 <td class="colFirst"><code><a href="../../../../org/micromanager/data/Coords.html" title="interface in org.micromanager.data">Coords</a></code></td>
-<td class="colLast"><span class="typeNameLabel">AbstractDataViewer.</span><code><span class="memberNameLink"><a href="../../../../org/micromanager/display/AbstractDataViewer.html#getDisplayPosition--">getDisplayPosition</a></span>()</code>
-<div class="block">Implements <code>getDisplayPosition</code>.</div>
+<td class="colLast"><span class="typeNameLabel">DisplayPositionChangedEvent.</span><code><span class="memberNameLink"><a href="../../../../org/micromanager/display/DisplayPositionChangedEvent.html#getDisplayPosition--">getDisplayPosition</a></span>()</code>
+<div class="block">returns the new display position.</div>
 </td>
 </tr>
 <tr class="altColor">

org/micromanager/data/class-use/Datastore.html

@@ -268,34 +268,34 @@ <h3>Uses of <a href="../../../../org/micromanager/data/Datastore.html" title="in
 </tr>
 <tr class="altColor">
 <td class="colFirst"><code><a href="../../../../org/micromanager/data/Datastore.html" title="interface in org.micromanager.data">Datastore</a></code></td>
-<td class="colLast"><span class="typeNameLabel">Annotation.</span><code><span class="memberNameLink"><a href="../../../../org/micromanager/data/Annotation.html#getDatastore--">getDatastore</a></span>()</code>
-<div class="block">Return the datastore to which this annotation is associated.</div>
+<td class="colLast"><span class="typeNameLabel">ImageDeletedEvent.</span><code><span class="memberNameLink"><a href="../../../../org/micromanager/data/ImageDeletedEvent.html#getDatastore--">getDatastore</a></span>()</code>
+<div class="block">Provides the Datastore this image was added to; potentially useful for
+ code that listens to events from multiple Datastores.</div>
 </td>
 </tr>
 <tr class="rowColor">
 <td class="colFirst"><code><a href="../../../../org/micromanager/data/Datastore.html" title="interface in org.micromanager.data">Datastore</a></code></td>
-<td class="colLast"><span class="typeNameLabel">DatastoreClosingEvent.</span><code><span class="memberNameLink"><a href="../../../../org/micromanager/data/DatastoreClosingEvent.html#getDatastore--">getDatastore</a></span>()</code>
-<div class="block">Returns the Datastore that is closing.</div>
+<td class="colLast"><span class="typeNameLabel">ImageOverwrittenEvent.</span><code><span class="memberNameLink"><a href="../../../../org/micromanager/data/ImageOverwrittenEvent.html#getDatastore--">getDatastore</a></span>()</code>
+<div class="block">Provides the Datastore this image was added to; potentially useful for
+ code that listens to events from multiple Datastores.</div>
 </td>
 </tr>
 <tr class="altColor">
 <td class="colFirst"><code><a href="../../../../org/micromanager/data/Datastore.html" title="interface in org.micromanager.data">Datastore</a></code></td>
-<td class="colLast"><span class="typeNameLabel">ImageDeletedEvent.</span><code><span class="memberNameLink"><a href="../../../../org/micromanager/data/ImageDeletedEvent.html#getDatastore--">getDatastore</a></span>()</code>
-<div class="block">Provides the Datastore this image was added to; potentially useful for
- code that listens to events from multiple Datastores.</div>
+<td class="colLast"><span class="typeNameLabel">DatastoreClosingEvent.</span><code><span class="memberNameLink"><a href="../../../../org/micromanager/data/DatastoreClosingEvent.html#getDatastore--">getDatastore</a></span>()</code>
+<div class="block">Returns the Datastore that is closing.</div>
 </td>
 </tr>
 <tr class="rowColor">
 <td class="colFirst"><code><a href="../../../../org/micromanager/data/Datastore.html" title="interface in org.micromanager.data">Datastore</a></code></td>
-<td class="colLast"><span class="typeNameLabel">Pipeline.</span><code><span class="memberNameLink"><a href="../../../../org/micromanager/data/Pipeline.html#getDatastore--">getDatastore</a></span>()</code>
-<div class="block">Get the output Datastore for this Pipeline.</div>
+<td class="colLast"><span class="typeNameLabel">Annotation.</span><code><span class="memberNameLink"><a href="../../../../org/micromanager/data/Annotation.html#getDatastore--">getDatastore</a></span>()</code>
+<div class="block">Return the datastore to which this annotation is associated.</div>
 </td>
 </tr>
 <tr class="altColor">
 <td class="colFirst"><code><a href="../../../../org/micromanager/data/Datastore.html" title="interface in org.micromanager.data">Datastore</a></code></td>
-<td class="colLast"><span class="typeNameLabel">ImageOverwrittenEvent.</span><code><span class="memberNameLink"><a href="../../../../org/micromanager/data/ImageOverwrittenEvent.html#getDatastore--">getDatastore</a></span>()</code>
-<div class="block">Provides the Datastore this image was added to; potentially useful for
- code that listens to events from multiple Datastores.</div>
+<td class="colLast"><span class="typeNameLabel">Pipeline.</span><code><span class="memberNameLink"><a href="../../../../org/micromanager/data/Pipeline.html#getDatastore--">getDatastore</a></span>()</code>
+<div class="block">Get the output Datastore for this Pipeline.</div>
 </td>
 </tr>
 <tr class="rowColor">