Illumina

GeneLab bioinformatics processing pipeline for Illumina metagenomics sequencing data

The document GL-DPPD-7107.md holds an overview and example commands for how GeneLab processes Illumina metagenomics sequencing datasets. See the Repository Links descriptions below for more information. Processed data output files and processing code are provided for each GLDS dataset in the Open Science Data Repository (OSDR).

Note: The exact processing commands and MGIllumina version used for specific GLDS datasets can be found in the *_processing_info.zip file under "Files" for each respective GLDS dataset in the Open Science Data Repository (OSDR).

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Repository Links

• Pipeline_GL-DPPD-7107_Versions

  • Contains the current and previous GeneLab Illumina metagenomics sequencing data processing pipeline (MGIllumina) versions documentation

• Workflow_Documentation

  • Contains instructions for installing and running the GeneLab MGIllumina workflow

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Developed and maintained by:
Michael D. Lee ([email protected])