Configuration for running nextflow on the clusters of the Digital Research Alliance of Canada. Invoke by specifying -profile alliance_canada
.
You also need to supply the name of the group under which you are working or whose resource allocation you want to use by running export SLURM_ACCOUNT=<def-user>
before you run any nf-core pipeline. If you run nf-core frequently and always use the same resource allocation, you may find it more convenient to add the SLURM_ACCOUNT
environment variable to your ~/.bashrc
file.
For detailed information on running nf-core pipelines on Alliance clusters, please visit the documentation: https://docs.alliancecan.ca/wiki/Nextflow
If you run into issues, please contact Alliance Support: https://docs.alliancecan.ca/wiki/Technical_support