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update user manual for 0.13.0
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UserManual/NimbleUserManual.pdf

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UserManual/cha-progr-with-models.html

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@@ -1316,7 +1316,7 @@ <h3><span class="header-section-number">15.5.1</span> User-defined samplers and
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<li>If you want to have MCMC samplers condition on posterior predictive nodes, do <code>nimbleOptions(MCMCusePredictiveDependenciesInCalculations = TRUE)</code>.</li>
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<li>If you want to get identical MCMC samplers, including their ordering, as in versions prior to 0.13.0, do <code>nimbleOptions(MCMCusePredictiveDependenciesInCalculations = TRUE)</code> and <code>nimbleOptions(MCMCorderPosteriorPredictiveSamplersLast = FALSE)</code>.</li>
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<li>If you want to experiment with the behavior of <code>getDependencies</code> when ignoring posterior predictive nodes, do nimbleOptions(getDependenciesIncludesPredictiveNodes = FALSE).</li>
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<li>If you want to experiment with the behavior of <code>getDependencies</code> when ignoring posterior predictive nodes, do <code>nimbleOptions(getDependenciesIncludesPredictiveNodes = FALSE)</code>.</li>
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</ul>
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</div>
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UserManual/search_index.json

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