BojarLab

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11 repositories

glycowork
Public
Package for processing and analyzing glycans and their role in biology.
python open-source data-science machine-learning bioinformatics computational-biology molecular-biology glycomics glycans glycobiology
Jupyter Notebook
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MIT License
•15•67•0•0•Updated Jun 20, 2025Jun 20, 2025
canonicalize_app
Public
Canonicalize glycan sequences via a web app
nomenclature sequence carbohydrates glycans glycobiology
Python
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MIT License
•0•0•0•0•Updated Jun 10, 2025Jun 10, 2025
glycorender
Public
Bespoke renderer for GlycoDraw .svg into .pdf/.png
svg pdf renderer glycoinformatics glycans
Python
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MIT License
•0•0•0•0•Updated Jun 7, 2025Jun 7, 2025
CandyCrunch
Public
Predicting glycan structure from LC-MS/MS data
machine-learning bioinformatics mass-spectrometry glycans python
Jupyter Notebook
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MIT License
•6•25•0•0•Updated Jun 5, 2025Jun 5, 2025
GIFFLAR
Public
Glycan Informed Foundational Framework for Learning Abstract Representations, based on Combinatorial Complexes and Heterogeneous GNNs
glycan graph-neural-network pretraining heterogeneous-graph-neural-network glycobiology foundational-models combinatorial-complex
HTML
•2•3•0•0•Updated May 23, 2025May 23, 2025
G-look-like
Public
Analyzing structure-function relationships in glycans
Jupyter Notebook
•0•0•0•0•Updated Apr 10, 2025Apr 10, 2025
FragmentFactory
Public
Devising human interpretable diagnostic glycan fragments
Python
•1•1•0•0•Updated Jan 21, 2025Jan 21, 2025
MilkGlycans
Public archive
Code and data for constructing and analyzing biosynthetic networks from free milk oligosaccharides
Jupyter Notebook
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MIT License
•0•1•0•0•Updated Jun 8, 2023Jun 8, 2023
scGlycomics_b16_branching
Public
Predicting single-cell glycosylation features from scRNA-seq
machine-learning deep-learning glycans glycobiology
Jupyter Notebook
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MIT License
•2•0•0•0•Updated Jul 7, 2022Jul 7, 2022
LectinOracle
Public archive
Deep learning model to predict interactions between proteins and glycans [LEGACY; use glycowork implementation]
machine-learning bioinformatics glycobiology lectins
Jupyter Notebook
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MIT License
•5•9•0•0•Updated Aug 16, 2021Aug 16, 2021
SweetNet
Public archive
Graph convolutional neural networks for analyzing glycans [LEGACY; use glycowork implementation]
machine-learning bioinformatics glycans glycobiology
Jupyter Notebook
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MIT License
•6•17•1•0•Updated Mar 9, 2021Mar 9, 2021