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@HiPCTProject

HiP-CT Project

Code associated with hierarchical phase-contrast tomography
README.md

HiP-CT Project

This organisation contains codes used internally within the HiP-CT project.

Where possible we've made these codes public so others can read and re-use. None of the code is designed to be general purpose or scientist-facing.

For public-facing codes for working with HiP-CT data in the Human Organ Atlas, see https://github.com/HumanOrganAtlas.

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  1. Tomo_Recon Tomo_Recon Public archive

    MATLAB 8

  2. stack-to-chunk stack-to-chunk Public

    Convert stacks of images to chunked datasets

    Python 7 1

  3. upsample-zarr upsample-zarr Public

    Upsample Zarr arrays

    Python 1

  4. rebin rebin Public

    Re-bin stacks of JPEG2000 images to reduce their filesize and resolution

    Python

  5. downsample-jp2s downsample-jp2s Public

    Script to create binned JPEG2000 datasets for HiP-CT data

    Python

  6. contrast-lims contrast-lims Public

    Script for calculating contrast limits for HiP-CT datasets

    Python

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