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Issues list

Running happy with rtg vcfeval engine does not result with FP.AL 0
#201 opened May 25, 2025 by kubranarci
2
Providing a New Docker Image for Easier Deployment
#199 opened Apr 28, 2025 by FFateMoney
1
VAF considered by HAPPY sensitivity and specificity
#198 opened Mar 5, 2025 by Belle-AM
query region doesn't contain variants
#197 opened Mar 5, 2025 by alisamatisse
1
Call for the TRUTH_VCF file
#196 opened Mar 3, 2025 by thangnx1012
3
Preoprocess might fail when complex SVs are presented
#195 opened Mar 2, 2025 by LYC-vio
Misclassification of FP as TP
#194 opened Jan 7, 2025 by sainsachiko
som.py throws error cannot call vectorize on size 0 inputs unless otypes is set
#193 opened Dec 2, 2024 by marrip
Persistent Warning Regarding INFO/IMPORT_FAIL in VCF Header
#192 opened Oct 2, 2024 by Iredcg
1
Using --usefiltered-truth results in incorrect FP calls for filtered variants in the truth (xcmp)
#191 opened Jul 24, 2024 by melferink
Make a new pre-built docker image?
#190 opened Jul 22, 2024 by Luobiny
While using hap.py, there is a problem:
#189 opened Jul 13, 2024 by pioneer-pi
Can't find reference
#188 opened May 30, 2024 by ktruve
1
How is the false positive rate calculated in som.py stats?
#187 opened Apr 25, 2024 by Krannich479
Docker build failed
#186 opened Apr 22, 2024 by MAlwaz
1
[E::bgzf_uncompress] inflate failed: invalid distance too far back
#185 opened Dec 13, 2023 by liukeweiaway
1
Incorrect number of FORMAT/AD values on scmp-distance engine
#181 opened Sep 5, 2023 by jerrywongzy
Docker fails to build for both bases
#180 opened Sep 1, 2023 by rickymagner
ROC and PR curve
#179 opened Aug 30, 2023 by ESDeutekom
2
Trying to print sequence when we mean contig name
#176 opened Apr 19, 2023 by adamnovak
VCF format issues with --write-vcf, - FORMAT field inconsistencies
#175 opened Apr 18, 2023 by insilicool
1
Integrating vcfdist as a comparison engine into hap.py
#173 opened Apr 5, 2023 by TimD1
Error running BCFTOOLS :Argument list too long
#172 opened Mar 16, 2023 by zhaolx01
Parsing results VCF gives different counts of TRUTH FN than summary
#170 opened Jan 24, 2023 by BrianLohman
2
pre.py -> vcfcheck fails due to call with invalid genotype (non-existent allele)
#169 opened Dec 4, 2022 by robertzeibich
ProTip! Updated in the last three days: updated:>2025-06-01.