In Pursuit of Total Reproducibility

This repository contains the sources for the paper "In Pursuit of Total Reproducibility".

Compilation

The main text can be found in event-sourcing-systems-biology.qmd. To compile the document, you need to have Quarto installed. You can install it from here. The document is configured to be compiled to either HTML

quarto render event-sourcing-systems-biology.qmd --to html

or PDF.

quarto render event-sourcing-systems-biology.qmd --to pdf

Some of the images are generated from PlantUML sources. To generate the images you can either use an online server or, for example, the PlantUML VS Code extension.

arXiv

For the arXiv submission, the sources were prepared in the following way:

1. Generate the PDF as above.
2. Copy the .tex file to arxiv.tex.
3. Remove the nesting for any references to the images in the .tex file.
4. Upload the modified .tex file and the images to arXiv.

Copyright

This work is licensed under the Creative Commons Attribution-ShareAlike 4.0 International License. To view a copy of this license, visit https://creativecommons.org/licenses/by-sa/4.0/ or send a letter to Creative Commons, PO Box 1866, Mountain View, CA 94042, USA.