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AI4Life Open Calls and Open Challenges

Project repositories for AI4Life Open Calls and Open Challenges

🎉 Welcome to the AI4Life - Open Calls repository 🎉

Each year, several projects are selected for deep learning support. The AI4Life Open Calls team then spend 6 months investigating ways to improve existing workflows and the applicability of deep learning to the selected projects.

In this repository, you can find a list of the finalized pipelines for each Open Call.

Year 1



Year 2



Year 3

  • 3 - Improving nuclei segmentation using Cellprofiler and StarDist
  • 11 - 3D Matrix Motility Map (3DM³)
  • 14 - The speed of life in trees
  • 17 - Imprints of Wind Disturbances on Wood Anatomy
  • 18 - Detection of Nuclear Pore Complexes with shape variability imaged by DNA PAINT
  • 19 - Segmentation of sparse bacteria in human tissue
  • 26 - Automatic microtubule doublet picking in tomograms



AI4Life has received funding from the European Union’s Horizon Europe research and innovation programme under grant agreement number 101057970. Views and opinions expressed are however those of the author(s) only and do not necessarily reflect those of the European Union or the European Research Council Executive Agency. Neither the European Union nor the granting authority can be held responsible for them.

Popular repositories Loading

  1. oc_1_project_52 oc_1_project_52 Public

    Plankton Organelle Segmentation

    Python 1

  2. AI4Life-MDC24-example-submission AI4Life-MDC24-example-submission Public

    An example of submission code and container for AI4Life-MDC24 challenge

    Python 1

  3. oc_2_project_38 oc_2_project_38 Public

    Corresponds to AI4Life Project 38 with Katharina Hennig from Instituto de Medicina Molecular in Lisboa in Edgar Gomes Lab. A 3D human motor neuron disease platform for high throughput drug screening.

    Jupyter Notebook 1 2

  4. .github .github Public

  5. oc-1-project-11 oc-1-project-11 Public

    Open Call #1: Segmentation and Tracking of Epithelial Cells

    Jupyter Notebook

  6. oc_1_project_3 oc_1_project_3 Public

    Ai4Life Open Call #1 - Project #3, semantic segmentation of kidney and heart tissue

    Jupyter Notebook

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