Search results

identity threshold of DIAMOND

Status: Open.

#992 In davidemms/OrthoFinder;

· scientisth opened on Jun 11, 2025

在执行Running diamond all-versus-all 出现闪退现象

Status: Open.

#991 In davidemms/OrthoFinder;

· N305-max opened on Jun 10, 2025

Using user specified species tree: start from orthogroups or from gene trees?

Status: Open.

#990 In davidemms/OrthoFinder;

· edwhisnant opened on Jun 9, 2025

Issue with primary_transcript.py

Status: Open.

#989 In davidemms/OrthoFinder;

· danielagandrade opened on Jun 2, 2025

Suggestions for setting the number of threads and memory usage

Status: Open.

#988 In davidemms/OrthoFinder;

· zishanw opened on May 25, 2025

Use mafft --genafpair

Status: Open.

#987 In davidemms/OrthoFinder;

· SalvadorGJ opened on May 22, 2025

Can OrthoFinder be used for intraspecific analyses?

Status: Open.

#986 In davidemms/OrthoFinder;

· shelkmike opened on May 8, 2025

ERRO

Status: Open.

#985 In davidemms/OrthoFinder;

· jwli-code opened on May 8, 2025

OrthoFinder -assign fail @ diamond makedb for unassigned.Species.fa as some are empty

Status: Open.

#984 In davidemms/OrthoFinder;

· richarddhaigh opened on May 7, 2025

the files fomrat of Single_Copy_Orthologue_Sequences of Orthofinder3 was different from OrthoFinder-2.5.2

Status: Open.

#983 In davidemms/OrthoFinder;

· YouxinZhao opened on Apr 13, 2025

Very few single-copy orthologs predicted in amphibian genomes

Status: Open.

#982 In davidemms/OrthoFinder;

· rdtarvin opened on Apr 11, 2025

genes in N0.tsv mismatches Single_Copy_Orthologue_Sequences and Orthogroups/Orthogroups_SingleCopyOrthologues.txt

Status: Open.

#981 In davidemms/OrthoFinder;

· tinyfallen opened on Apr 11, 2025