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@giffordlabcvr

Rob J. Gifford Lab

Comparative Virus Research | Collaborative Virus Research

Overview

The Gifford Lab conducts scientific investigations into the evolution of viruses and their impact on host species.

Research themes include:

  • Long-term evolution of viruses: Exploring how viruses evolve over extended timescales.
  • Origins and emergence of viral pathogens: Investigating the evolutionary history and cross-species transmission events that give rise to new viral pathogens.
  • Impact of viruses on host species evolution: Examining how interactions with viruses shapes the evolution of host species.
  • Paleovirology: Uncovering the ancient interactions between viruses and hosts through the study of endogenous viral elements (EVEs).

Software & Resources

We are dedicated to advancing comparative genomics by creating open resources that promote collaborative research.

Our main focus is the GLUE software framework and various genomics resources developed using this framework.

We have also developed the DIGS tool - a framework for performing systematic in silico genome screening.

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  1. gluetools gluetools Public

    An open, platform-independent software toolkit for storage and interpretation of sequence data, implemented in Java.

    Java 12 2

  2. RABV-GLUE RABV-GLUE Public

    A GLUE project for Rabies Virus (RABV).

    JavaScript 2

  3. Dengue-GLUE Dengue-GLUE Public

    A GLUE project for dengue virus (DENV)

    JavaScript

  4. HCV-GLUE HCV-GLUE Public

    A GLUE project for Hepatitis C virus (HCV)

    F* 2

  5. DIGS-tool DIGS-tool Public

    Database-Integrated Genome Screening (DIGS) tool. Explore the dark genome using BLAST and a relational database.

    Perl 11 6

  6. WNV-GLUE WNV-GLUE Public

    A GLUE project for West Nile virus (WNV)

    JavaScript

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