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Update step1-download.R #3

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Update step1-download.R #3

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6 changes: 3 additions & 3 deletions GSE42872_main/step1-download.R
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Original file line number Diff line number Diff line change
Expand Up @@ -56,8 +56,8 @@ if(F){
#Download GPL file, put it in the current directory, and load it:
gpl <- getGEO('GPL6244', destdir=".")
colnames(Table(gpl))
head(Table(gpl)[,c(1,15)]) ## you need to check this , which column do you need
probe2gene=Table(gpl)[,c(1,15)]
head(Table(gpl)[,c(1,12)]) ## you need to check this , which column do you need
probe2gene=Table(gpl)[,c(1,12)]
head(probe2gene)
library(stringr)
save(probe2gene,file='probe2gene.Rdata')
Expand Down Expand Up @@ -90,4 +90,4 @@ save(dat,group_list,file = 'step1-output.Rdata')