Make some slots on MassSpectrometryConfiguration and ChromatographyConfiguration required and create a migrator

[hesspnnl]

MERGE AFTER #2461

• On MassSpectrometryConfiguration type, made slots mass_spectrometry_acquisition_strategy, resolution_categories, mass_analyzers, ionization_source, mass_spectrum_collection_modes, and polarity_mode required
• On ChromatographyConfiguration type, made slots chromatographic_category and stationary_phase required
• Created a migrator to validate the data
• Tested the migrators locally against mongo db data

Closes #2457
Closes #2456

[github-actions]

PR Preview Action v1.6.1
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[kheal]

There are a lot of new invalid tests, I'll let @turbomam decide if we want to keep them all or cull to a couple examples.

[eecavanna]

I'll review this migrator later today. Thanks for implementing this!

[eecavanna]

I left feedback about the part_3 migrator in PR #2461.

I left feedback about the part_4 migrator here in this PR. The migrator looks good to me. I think it is already functionally done; i.e. that it will do what it was designed to do. I left feedback about formatting (consistency of newline inclusion), changing some "AND"s to "OR"s, and a missing word (i.e. "have") in a docstring. I also left a comment about calling dict.get(key) once up front and then referencing the result as needed.

[turbomam]

Thanks, this is good.

I see that some kinds of configurations were added to example files that were supposed to be invalid because they were lacking a configuration

If the RP actions passed (including the examples runner in the makefile) then I guess everything is technically OK, but I am a little confused.

Does my poorly worded concern make sense? I can flesh it out if necessary. The goal is for the example data files to be invalid for one and only one reason... maybe that's what you were working towards?