Repositories list

• snakemake-RNAseq

  Public
  Standard RNAseq analysis pipeline using snakemake.

  rna-seqsnakemakestar+ 3salmonrsemfastqc

  Python

  •1•0•0•0•Updated Apr 23, 2025Apr 23, 2025

• TrPLet

  Public
  R

  •

  MIT License

  •0•1•0•0•Updated Mar 29, 2025Mar 29, 2025

• WGS-TRCC

  Public
  Jupyter Notebook

  •1•4•0•0•Updated Jul 15, 2024Jul 15, 2024

• MitochondriaPipeline

  Public
  Mitochondrial short variant discovery (SNVs + Indels)

  Shell

  •

  MIT License

  •0•1•0•0•Updated Dec 12, 2022Dec 12, 2022

• PhylogicNDT

  Public
  Forked repository of the PhylogicNDT code with updates to get the dockerfile working

  HTML

  •

  Other

  •42•0•0•0•Updated Sep 14, 2022Sep 14, 2022

• XIST-Males-Scripts

  Public
  Python

  •

  MIT License

  •0•0•0•0•Updated Aug 20, 2022Aug 20, 2022

• crpc-sv-pattern-study

  Public
  R

  •3•0•0•0•Updated Aug 5, 2022Aug 5, 2022

• Snakemake_mutect2_v4.2.5

  Public
  Personal repository to store syntax, examples and notes for Snakemake collected from different resources

  2•0•0•0•Updated Jul 1, 2022Jul 1, 2022