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    11 repositories

    • gooviz

      Public
      Visualization dashboard for plotting simulation data from Goo.
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•1•0•0•Updated May 10, 2025May 10, 2025

    • goo

      Public
      Goo is a Blender library for modeling biological cells, tissues, and embryos
      blendercell-simulation
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •11•53•14•1•Updated May 9, 2025May 9, 2025

    • blender4.0-goo

      Public
      Source code of Blender 4.0, optimized to run cell simulations using Goo.
      C++
      •
      Other
      •0•0•0•0•Updated May 7, 2025May 7, 2025

    • Garner_etal_2025_Fluidity_Sorting

      Public
      Code accompanying Garner et al., 2025 "Tissue Fluidity: A Double-Edged Sword for Multicellular Patterning" bioRxiv doi: https://doi.org/10.1101/2025.03.01.640992
      MATLAB
      •
      MIT License
      •0•1•0•0•Updated Apr 3, 2025Apr 3, 2025

    • blender-goo

      Public
      Official mirror of Blender, tweaked to optimize cell simulations using Goo.
      C++
      •
      Other
      •2.3k•0•0•0•Updated Mar 24, 2025Mar 24, 2025

    • .github

      Public
      About.
      0•0•0•0•Updated Oct 30, 2024Oct 30, 2024

    • FormationControl

      Public
      Vertex models for formation control
      C++
      •
      BSD 3-Clause "New" or "Revised" License
      •0•1•0•0•Updated Apr 23, 2024Apr 23, 2024

    • scube2

      Public
      MATLAB
      •0•0•0•0•Updated Feb 9, 2024Feb 9, 2024

    • SMIM

      Public
      Sequential Multiview MIcroscopy
      Jupyter Notebook
      •
      Creative Commons Zero v1.0 Universal
      •0•0•0•0•Updated Jun 26, 2023Jun 26, 2023

    • ACME

      Public
      This repository contains open-source C++ code for reconstructing membranes from time-lapse confocal/2-photon image data. Please refer to the webpage below for detailed instructions, precompiled binaries, and sample data for testing the code.
      C++
      •5•0•0•0•Updated Apr 3, 2019Apr 3, 2019

    • Megamapper

      Public
      This is code from the paper "Rapid positional cloning of zebrafish mutations by linkage and homozygosity mapping using whole-genome sequencing" doi: https://pubmed.ncbi.nlm.nih.gov/23052906/
      Shell
      •
      Other
      •1•0•0•0•Updated Apr 13, 2015Apr 13, 2015