refactor: move `{raster}` and `{terra}` to Suggests #943

olivroy · 2025-03-03T16:39:40Z

Follow-up to #942

I couldn't use the same approach because I didn't find the documentation in terra for automatic conversion raster -> terra like the useful sf::st_as_sf().

Avoid using {raster} in examples
Update CI to avoid deprecation warnings

This reverts commit 15da72f.

.github/workflows/R-CMD-check.yaml

NEWS.md

R/data.R

schloerke · 2025-03-04T01:19:39Z

DESCRIPTION

    rlang,
    RColorBrewer,
    scales (>= 1.0.0),
    sf (>= 0.9-6),
    stats,
+    terra (>= 1.6-3),


Is it possible to keep {terra} as a Suggests? To me, it's similar to {hexbin} being suggested by {ggplot2}.

If a package w/ install difficulties is not critical path to the main package, I like to make the package a Suggest dependency when possible.

(If so, this will require a few reverts to rlang::check_installed("terra")

Okay, let's do this! Could you run revdep checks after merge? I could help if some revdeps are failing.

Could you run revdep checks after merge?

Sure, np! I can also run it on this branch and push back results, if you'd like.

🤦
🏃
✅

6 new problems. 1 seems like false-positive. The other 5 are related to sf or sp.

It may be a case for making PRs upstream if they are using outdated codes (as it's only a handful).

jcheng5 · 2025-03-05T16:34:46Z

I will leave the reviewing to @schloerke but I just wanted to say thank you, @olivroy, for these great contributions!

schloerke

@olivroy I'm guessing the revdepcheck errors came from #942 , not this PR.

I'm happy to merge this PR. But the revdep failures should be addressed before the next release.

olivroy · 2025-08-05T11:12:25Z

sounds good to me! I will take a look

schloerke · 2025-08-05T13:04:12Z

Larger revdepcheck result output

broken <- revdepcheck::cloud_broken()
broken_results <- revdepcheck::cloud_results() |> Filter(f = \(x) x$package %in% broken)
logs <-
    lapply(broken_results, \(info) info$cmp$output |> paste0(collapse = "\n")) |> 
    as.list() |> 
    setNames(vapply(broken_results, \(info) info$package[[1]], character(1)))

ignore <-
    Map(names(logs), logs, f = \(name, log) {
        cat(paste0("## ", name, "\n\n"))
        cat("```r\n")
        cat(log)
        cat("\n```\n\n")
    })

AtlasMaker

checking installed package size ... NOTE
  installed size is  6.7Mb
  sub-directories of 1Mb or more:
    data   6.5Mb
checking data for non-ASCII characters ... WARNING
  Error loading dataset 'amphibians':
   Error in .requirePackage(package) : unable to find required package 'sp'
  
  Error loading dataset 'birds':
   Error in .requirePackage(package) : unable to find required package 'sp'
  
  Error loading dataset 'flowering_plants':
   Error in .requirePackage(package) : unable to find required package 'sp'
  
  Error loading dataset 'reptiles':
   Error in .requirePackage(package) : unable to find required package 'sp'
  
  The dataset(s) may use package(s) not declared in Depends/Imports.
checking installed package size ... NOTE
  installed size is  6.7Mb
  sub-directories of 1Mb or more:
    data   6.5Mb

leafgl

checking tests ... ERROR
  Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(leafgl)
  > 
  > test_check("leafgl")
  [ FAIL 3 | WARN 0 | SKIP 0 | PASS 370 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test-leafgl-addGlPolygons.R:26:3'): addGlPolygons works ─────────────
  Error in `asMethod(object)`: package sp required, please install it first
  Backtrace:
      ▆
   1. └─methods::as(single_poly, "Spatial") at test-leafgl-addGlPolygons.R:26:3
   2.   └─sf (local) asMethod(object)
  ── Error ('test-leafgl-popup.R:507:3'): popup-lines-spatial ────────────────────
  <packageNotFoundError/error/condition>
  Error in `loadNamespace(x)`: there is no package called 'sp'
  Backtrace:
      ▆
   1. ├─base::suppressWarnings(sf::as_Spatial(storms)) at test-leafgl-popup.R:507:3
   2. │ └─base::withCallingHandlers(...)
   3. ├─sf::as_Spatial(storms)
   4. └─base::loadNamespace(x)
   5.   └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
   6.     └─base (local) withOneRestart(expr, restarts[[1L]])
   7.       └─base (local) doWithOneRestart(return(expr), restart)
  ── Error ('test-leafgl-popup.R:721:3'): popup-polygon-spatial ──────────────────
  <packageNotFoundError/error/condition>
  Error in `loadNamespace(x)`: there is no package called 'sp'
  Backtrace:
      ▆
   1. ├─base::suppressWarnings(sf::as_Spatial(gadm)) at test-leafgl-popup.R:721:3
   2. │ └─base::withCallingHandlers(...)
   3. ├─sf::as_Spatial(gadm)
   4. └─base::loadNamespace(x)
   5.   └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
   6.     └─base (local) withOneRestart(expr, restarts[[1L]])
   7.       └─base (local) doWithOneRestart(return(expr), restart)
  
  [ FAIL 3 | WARN 0 | SKIP 0 | PASS 370 ]
  Error: Test failures
  Execution halted

leaflet.extras2

checking tests ... ERROR
  Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(htmltools)
  > library(leaflet)
  > library(leaflet.extras2)
  > 
  > test_check("leaflet.extras2")
  [ FAIL 1 | WARN 0 | SKIP 0 | PASS 440 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test-playback.R:355:3'): playback ───────────────────────────────────
  Error: unable to find an inherited method for function 'coordinates' for signature 'obj = "sf"'
  Backtrace:
      ▆
   1. └─sp::coordinates(leaflet::atlStorms2005[1, ]) at test-playback.R:355:3
   2.   └─methods (local) `<fn>`(`<list>`, `<S4: standardGeneric>`, `<env>`)
  
  [ FAIL 1 | WARN 0 | SKIP 0 | PASS 440 ]
  Error: Test failures
  Execution halted

lingtypology

checking installed package size ... NOTE
  installed size is  7.7Mb
  sub-directories of 1Mb or more:
    data   6.5Mb
checking data for non-ASCII characters ... NOTE
  Note: found 60812 marked UTF-8 strings
checking tests ... ERROR
  Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(lingtypology)
  Based on the Glottolog v. 5.2
  > 
  > test_check("lingtypology")
  [ FAIL 1 | WARN 0 | SKIP 34 | PASS 0 ]
  
  ══ Skipped tests (34) ══════════════════════════════════════════════════════════
  • On CRAN (34): 'test-abvd-feature.R:4:3', 'test-afbo-feature.R:5:3',
    'test-aff-lang.R:4:3', 'test-area-lang.R:7:3', 'test-bantu-feature.R:5:3',
    'test-country-lang.R:4:3', 'test-eurasianphonology-feature.R:5:3',
    'test-glottolog-database.R:5:3', 'test-glottolog-database.R:10:3',
    'test-gltc-iso.R:7:3', 'test-gltc-lang.R:7:3', 'test-grambank-feature.R:5:3',
    'test-iso-gltc.R:7:3', 'test-iso-lang.R:7:3', 'test-lang-aff.R:6:3',
    'test-lang-gltc.R:7:3', 'test-lang-iso.R:7:3', 'test-lat-lang.R:7:3',
    'test-level.lang.R:7:3', 'test-long-lang.R:7:3', 'test-mapfeature.R:8:3',
    'test-mapfeature.R:15:3', 'test-mapfeature.R:21:3', 'test-mapfeature.R:35:3',
    'test-mapfeature.R:83:3', 'test-mapfeature.R:93:3',
    'test-mapfeature.R:120:3', 'test-mapfeature.R:146:3',
    'test-sails-feature.R:5:3', 'test-soundcomparisons-feature.R:5:3',
    'test-subc-lang.R:4:3', 'test-url-lang.R:7:3', 'test-vanuatu-feature.R:5:3',
    'test-wals-feature.R:5:3'
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test-mapfeature.R:161:1'): (code run outside of `test_that()`) ──────
  Error in `leaflet::addProviderTiles(leaflet::addTiles(m, tile[1]), tile[1], 
      group = tile.name[1], options = leaflet::providerTileOptions(opacity = tile.opacity))`: Unknown tile provider 'OpenStreetMap.BlackAndWhite'; either use a known provider or pass `check = FALSE` to `addProviderTiles()`
  Backtrace:
      ▆
   1. └─lingtypology::map.feature(...) at test-mapfeature.R:161:1
   2.   └─leaflet::addProviderTiles(...)
  
  [ FAIL 1 | WARN 0 | SKIP 34 | PASS 0 ]
  Error: Test failures
  Execution halted
checking installed package size ... NOTE
  installed size is  7.7Mb
  sub-directories of 1Mb or more:
    data   6.5Mb
checking data for non-ASCII characters ... NOTE
  Note: found 60812 marked UTF-8 strings

mapview

checking data for non-ASCII characters ... NOTE
  Note: found 1 marked UTF-8 string
checking tests ... ERROR
  Running ‘tinytest.R’
Running the tests in ‘tests/tinytest.R’ failed.
Complete output:
  > if (requireNamespace("tinytest", quietly=TRUE)) {
  +   tinytest::test_package("mapview")
  + }
  
  test-color.R..................    0 tests    
  test-color.R..................    1 tests OK 
  test-color.R..................    2 tests OK 
  test-color.R..................    3 tests OK 
  test-color.R..................    4 tests OK 
  test-color.R..................    5 tests OK 
  test-color.R..................    6 tests OK 53ms
  Linking to GEOS 3.12.1, GDAL 3.8.4, PROJ 9.4.0; sf_use_s2() is TRUE
  
  test-mapview.R................    0 tests    
  test-mapview.R................    0 tests    
  test-mapview.R................    0 tests    
  test-mapview.R................    1 tests OK 
  test-mapview.R................    2 tests OK 
  test-mapview.R................    3 tests OK 
  test-mapview.R................    4 tests OK 
  test-mapview.R................    4 tests OK 
  test-mapview.R................    5 tests OK 
  test-mapview.R................    6 tests OK 
  test-mapview.R................    7 tests OK 
  test-mapview.R................    8 tests OK 
  test-mapview.R................    8 tests OK 
  test-mapview.R................    8 tests OK 
  test-mapview.R................    9 tests OK 
  test-mapview.R................   10 tests OK 
  test-mapview.R................   11 tests OK 
  test-mapview.R................   12 tests OK 
  test-mapview.R................   12 tests OK 
  test-mapview.R................   13 tests OK 
  test-mapview.R................   14 tests OK 
  test-mapview.R................   15 tests OK 
  test-mapview.R................   16 tests OK 
  test-mapview.R................   16 tests OK 
  test-mapview.R................   16 tests OK 
  test-mapview.R................   17 tests OK 
  test-mapview.R................   18 tests OK 
  test-mapview.R................   19 tests OK 
  test-mapview.R................   20 tests OK 
  test-mapview.R................   20 tests OK 
  test-mapview.R................   21 tests OK 
  test-mapview.R................   22 tests OK 
  test-mapview.R................   23 tests OK 
  test-mapview.R................   24 tests OK 
  test-mapview.R................   24 tests OK 
  test-mapview.R................   24 tests OK 
  test-mapview.R................   25 tests OK 
  test-mapview.R................   26 tests OK 
  test-mapview.R................   27 tests OK 
  test-mapview.R................   28 tests OK 
  test-mapview.R................   28 tests OK 
  test-mapview.R................   29 tests OK 
  test-mapview.R................   30 tests OK 
  test-mapview.R................   31 tests OK 
  test-mapview.R................   32 tests OK 
  test-mapview.R................   32 tests OK 
  test-mapview.R................   32 tests OK 
  test-mapview.R................   33 tests OK 
  test-mapview.R................   33 tests OK 
  test-mapview.R................   34 tests OK 
  test-mapview.R................   34 tests OK 
  test-mapview.R................   34 tests OK 
  test-mapview.R................   35 tests OK 
  test-mapview.R................   36 tests OK 
  test-mapview.R................   37 tests OK 
  test-mapview.R................   38 tests OK 
  test-mapview.R................   38 tests OK 
  test-mapview.R................   39 tests OK 
  test-mapview.R................   40 tests OK 
  test-mapview.R................   41 tests OK 
  test-mapview.R................   42 tests OK Loading required package: sp
  
  test-mapview.R................   42 tests OK 
  test-mapview.R................   42 tests OK 
  test-mapview.R................   43 tests OK 
  test-mapview.R................   44 tests OK 
  test-mapview.R................   45 tests OK 
  test-mapview.R................   46 tests OK 
  test-mapview.R................   46 tests OK 
  test-mapview.R................   47 tests OK 
  test-mapview.R................   48 tests OK 
  test-mapview.R................   49 tests OK 
  test-mapview.R................   50 tests OK 
  test-mapview.R................   50 tests OK 
  test-mapview.R................   50 tests OK 
  test-mapview.R................   51 tests OK 
  test-mapview.R................   52 tests OK 
  test-mapview.R................   53 tests OK 
  test-mapview.R................   54 tests OK 
  test-mapview.R................   54 tests OK 
  test-mapview.R................   55 tests OK 
  test-mapview.R................   56 tests OK 
  test-mapview.R................   57 tests OK 
  test-mapview.R................   58 tests OK 
  test-mapview.R................   58 tests OK 
  test-mapview.R................   59 tests OK 
  test-mapview.R................   60 tests OK 
  test-mapview.R................   61 tests OK 
  test-mapview.R................   62 tests OK 
  test-mapview.R................   62 tests OK 
  test-mapview.R................   63 tests OK 
  test-mapview.R................   64 tests OK 
  test-mapview.R................   65 tests OK 
  test-mapview.R................   66 tests OK 
  test-mapview.R................   66 tests OK 
  test-mapview.R................   67 tests OK 
  test-mapview.R................   68 tests OK 
  test-mapview.R................   69 tests OK 
  test-mapview.R................   70 tests OK 
  test-mapview.R................   70 tests OK 
  test-mapview.R................   71 tests OK 
  test-mapview.R................   72 tests OK 
  test-mapview.R................   73 tests OK 
  test-mapview.R................   74 tests OK 
  test-mapview.R................   74 tests OK 
  test-mapview.R................   75 tests OK 
  test-mapview.R................   76 tests OK 
  test-mapview.R................   77 tests OK 
  test-mapview.R................   78 tests OK 
  test-mapview.R................   78 tests OK 
  test-mapview.R................   79 tests OK 
  test-mapview.R................   80 tests OK 
  test-mapview.R................   81 tests OK 
  test-mapview.R................   82 tests OK 
  test-mapview.R................   82 tests OK 
  test-mapview.R................   82 tests OK 
  test-mapview.R................   83 tests OK 
  test-mapview.R................   84 tests OK 
  test-mapview.R................   85 tests OK 
  test-mapview.R................   86 tests OK 
  test-mapview.R................   86 tests OK 
  test-mapview.R................   87 tests OK 
  test-mapview.R................   88 tests OK 
  test-mapview.R................   89 tests OK 
  test-mapview.R................   90 tests OK 
  test-mapview.R................   90 tests OK 
  test-mapview.R................   91 tests OK 
  test-mapview.R................   92 tests OK 
  test-mapview.R................   93 tests OK 
  test-mapview.R................   94 tests OK 
  test-mapview.R................   94 tests OK 
  test-mapview.R................   95 tests OK 
  test-mapview.R................   96 tests OK 
  test-mapview.R................   97 tests OK 
  test-mapview.R................   98 tests OK 
  test-mapview.R................   98 tests OK 
  test-mapview.R................   99 tests OK 
  test-mapview.R................  100 tests OK 
  test-mapview.R................  101 tests OK 
  test-mapview.R................  102 tests OK 
  test-mapview.R................  102 tests OK 
  test-mapview.R................  103 tests OK 
  test-mapview.R................  104 tests OK 
  test-mapview.R................  105 tests OK 
  test-mapview.R................  106 tests OK 
  test-mapview.R................  106 tests OK 
  test-mapview.R................  106 tests OK 
  test-mapview.R................  107 tests OK 
  test-mapview.R................  108 tests OK 
  test-mapview.R................  109 tests OK 
  test-mapview.R................  110 tests OK 
  test-mapview.R................  110 tests OK 
  test-mapview.R................  111 tests OK 
  test-mapview.R................  112 tests OK 
  test-mapview.R................  113 tests OK 
  test-mapview.R................  114 tests OK 
  test-mapview.R................  114 tests OK 
  test-mapview.R................  114 tests OK 
  test-mapview.R................  115 tests OK 
  test-mapview.R................  116 tests OK 
  test-mapview.R................  117 tests OK 
  test-mapview.R................  118 tests OK 
  test-mapview.R................  118 tests OK 
  test-mapview.R................  119 tests OK 
  test-mapview.R................  120 tests OK 
  test-mapview.R................  121 tests OK 
  test-mapview.R................  122 tests OK 
  test-mapview.R................  122 tests OK 
  test-mapview.R................  122 tests OK Error in as(atlStorms2005, "SpatialLines") : 
    no method or default for coercing "sf" to "SpatialLines"
  Calls: <Anonymous> ... eval -> mapview -> standardGeneric -> eval -> eval -> as
  Execution halted
checking data for non-ASCII characters ... NOTE
  Note: found 1 marked UTF-8 string

rapr

checking tests ... ERROR
  Running ‘tinytest.R’
Running the tests in ‘tests/tinytest.R’ failed.
Complete output:
  > 
  > if ( requireNamespace("tinytest", quietly=TRUE) ){
  +   tinytest::test_package("rapr")
  + }
  
  test_rapr.R...................    0 tests    
  test_rapr.R...................    0 tests    
  test_rapr.R...................    0 tests    
  test_rapr.R...................    0 tests    
  test_rapr.R...................    1 tests OK 
  test_rapr.R...................    2 tests OK 
  test_rapr.R...................    3 tests OK 
  test_rapr.R...................    3 tests OK 
  test_rapr.R...................    3 tests OK 
  test_rapr.R...................    4 tests OK 
  test_rapr.R...................    5 tests OK 
  test_rapr.R...................    6 tests OK 
  test_rapr.R...................    7 tests OK 
  test_rapr.R...................    7 tests OK Loading required namespace: sf
  
  test_rapr.R...................    7 tests OK 
  test_rapr.R...................    8 tests OK 
  test_rapr.R...................    9 tests OK 
  test_rapr.R...................   10 tests OK 
  test_rapr.R...................   10 tests OK 
  test_rapr.R...................   10 tests OK 
  test_rapr.R...................   11 tests OK 
  test_rapr.R...................   12 tests OK 
  test_rapr.R...................   13 tests OK 
  test_rapr.R...................   14 tests OK 
  test_rapr.R...................   14 tests OK Error in sfc2SpatialPolygons(from, IDs) : 
    package sp required, please install it first
  Calls: <Anonymous> ... <Anonymous> -> as_Spatial -> .as_Spatial -> sfc2SpatialPolygons
  Execution halted

schloerke · 2025-08-05T13:04:33Z

One article to fix before merge. Thank you, @olivroy !

2025-08-05T04:01:05.0930571Z Reading vignettes/articles/projections.Rmd
2025-08-05T04:01:06.7633298Z Error in `.f()`:
2025-08-05T04:01:06.7633851Z ! Failed to render 'vignettes/articles/projections.Rmd'.
2025-08-05T04:01:06.7634731Z ✖ Quitting from projections.Rmd:81-110 [unnamed-chunk-6]
2025-08-05T04:01:06.7635184Z Caused by error:
2025-08-05T04:01:06.7635623Z ! `x` must be a vector, not a <sfc_MULTIPOLYGON/sfc> object.
2025-08-05T04:01:06.7636463Z Backtrace:
2025-08-05T04:01:06.7636722Z      ▆
2025-08-05T04:01:06.7637452Z   1. ├─dplyr::filter(rnaturalearth::countries110, CONTINENT == "North America")
2025-08-05T04:01:06.7638127Z   2. ├─dplyr:::filter.data.frame(...)
2025-08-05T04:01:06.7639028Z   3. │ ├─dplyr::dplyr_row_slice(.data, loc, preserve = .preserve)
2025-08-05T04:01:06.7641915Z   4. │ └─dplyr:::dplyr_row_slice.data.frame(.data, loc, preserve = .preserve)
2025-08-05T04:01:06.7643061Z   5. │   ├─dplyr::dplyr_reconstruct(vec_slice(data, i), data)
2025-08-05T04:01:06.7643861Z   6. │   │ └─dplyr:::dplyr_new_data_frame(data)
2025-08-05T04:01:06.7645094Z   7. │   │   ├─row.names %||% .row_names_info(x, type = 0L)
2025-08-05T04:01:06.7645950Z   8. │   │   └─base::.row_names_info(x, type = 0L)
2025-08-05T04:01:06.7646623Z   9. │   └─vctrs::vec_slice(data, i)
2025-08-05T04:01:06.7647474Z  10. └─vctrs:::stop_scalar_type(`<fn>`(`<s_MULTIP>`), "x", `<fn>`(vec_size()))
2025-08-05T04:01:06.7648638Z  11.   └─vctrs:::stop_vctrs(...)
2025-08-05T04:01:06.7649752Z  12.     └─rlang::abort(message, class = c(class, "vctrs_error"), ..., call = call)

olivroy · 2025-08-05T13:29:22Z

It seems that the problem lied in the fact that filter.sf() method was not loaded. Loading the sf package fixes this!

olivroy added 10 commits March 3, 2025 11:37

use recent ubuntu

010944f

use test helpers

e2fea24

Use terra instead of raster by default

12a5777

Import terra instead of raster and avoid using deprecated crs in example

19fa69c

Various updates / examples

79edf12

Transform built-in datasets to sf objects instead of sp.

15da72f

Correct self-links + avoid deprecated @describeIn

49dfcd0

Avoid using invalid terra argument

4dde3f6

fix docs

b949bc3

Revert "Transform built-in datasets to sf objects instead of sp."

31b982e

This reverts commit 15da72f.

olivroy marked this pull request as ready for review March 3, 2025 19:06

olivroy and others added 2 commits March 3, 2025 14:10

fix typo

ce4cb76

Merge branch 'main' into ci

668ac73

schloerke changed the title ~~Replace raster with terra~~ refactor: Replace {raster} with {terra} Mar 4, 2025

schloerke requested changes Mar 4, 2025

View reviewed changes

olivroy added 2 commits March 4, 2025 09:13

address suggestions + move terra to Suggests + run examples selectively

b8fbea7

attempt to remove ubuntu22

16c8b01

olivroy changed the title ~~refactor: Replace {raster} with {terra}~~ refactor: move {raster} and {terra} to Suggests Mar 4, 2025

olivroy requested a review from schloerke August 4, 2025 18:09

schloerke added 3 commits August 4, 2025 23:40

revdepcheck::cloud_check(); revdepcheck::cloud_report()

6875bcf

usethis::use_tidy_description()

4a094dd

Update DESCRIPTION

0aad5c6

schloerke approved these changes Aug 5, 2025

View reviewed changes

Fix vignette building

7a91768

olivroy mentioned this pull request Aug 5, 2025

leaflet no longer imports sp and is more strict about tiles #952

Closed

6 tasks

refactor: move {raster} and {terra} to Suggests #943

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refactor: move {raster} and {terra} to Suggests #943

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jcheng5 commented Mar 5, 2025

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olivroy commented Aug 5, 2025

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schloerke commented Aug 5, 2025

AtlasMaker

leafgl

leaflet.extras2

lingtypology

mapview

rapr

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schloerke commented Aug 5, 2025

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olivroy commented Aug 5, 2025

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refactor: move `{raster}` and `{terra}` to Suggests #943

refactor: move `{raster}` and `{terra}` to Suggests #943

olivroy commented Mar 3, 2025 •

edited

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