What's Changed
- First version of lora pipeline by @ddesvillechabrol in #3
- Add hifiasm & Split snakefile & Use sequana-wrappers by @ddesvillechabrol in #4
- refacto lora like other pipelines & remove sequana dep by @ddesvillechabrol in #10
- add merge data after ccs generation by @ddesvillechabrol in #16
- Add flye assembler by @ddesvillechabrol in #18
- fix pipeline using input_directory by @ddesvillechabrol in #19
- Fixing #22, #21 and #20 by @cokelaer in #23
- update canu options & add circlator force option by @ddesvillechabrol in #27
- Improvement to the UI , small HTML change, multiqc modules added by @cokelaer in #31
- Blast only contig subset by @ddesvillechabrol in #33
- Create summary page by @ddesvillechabrol in #34
- Use tailwind instead of bulma by @ddesvillechabrol in #35
- scheme for integration of polishing step by @ddesvillechabrol in #41
- Add polypolish by @cokelaer in #42
- add medaka_consensus & use profile by @ddesvillechabrol in #43
- Add polishing nanopore by @ddesvillechabrol in #44
- add apptainers by @cokelaer in #45
- add more containers and small refactoring by @cokelaer in #46
- Use poetry by @ddesvillechabrol in #50
- set input for nanopore to fastq, fix min-rq type by @cokelaer in #52
- get version from apptainer & update rulegraph by @ddesvillechabrol in #54
- add checkm software by @cokelaer in #58
- Fixing CI workflow by @cokelaer in #59
- Add multiqc,unicycler, update to use click by @cokelaer in #60
- add precommit, update flye container, small fixes by @cokelaer in #65
- Major update by @cokelaer in #67
New Contributors
- @ddesvillechabrol made their first contribution in #3
- @cokelaer made their first contribution in #23
Full Changelog: https://github.com/sequana/lora/commits/v1.0.0
Contributors
cokelaer and ddesvillechabrol