Skip to content

Issues: sgkit-dev/vcztools

Beta
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

58 Open 53 Closed
58 Open 53 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

Add OpenTelemetry support? enhancement New feature or request
#196 opened Apr 7, 2025 by jeromekelleher
1
Support higher dimensional INFO fields in filtering expressions
#193 opened Apr 4, 2025 by jeromekelleher
Functions not supported in query
#192 opened Apr 4, 2025 by jeromekelleher
Automatic variables not supported in query
#191 opened Apr 4, 2025 by jeromekelleher
1
All functions unsupported in filtering query language
#190 opened Apr 4, 2025 by jeromekelleher
String operands unsupported in filtering language
#189 opened Apr 4, 2025 by jeromekelleher
1
Add test for flag valued columns in filtering
#187 opened Apr 4, 2025 by jeromekelleher
Add modulo support for filter arithmetic enhancement New feature or request
#185 opened Apr 3, 2025 by jeromekelleher
Remove "original_header" from write_vcf and improve test coverage
#184 opened Apr 3, 2025 by jeromekelleher
1
Improve error messages from filter expression parsing
#183 opened Apr 3, 2025 by jeromekelleher
1
Refactor query engine to fully use the chunk retrieval
#182 opened Apr 3, 2025 by jeromekelleher
1
Test name-mapping precedence against bcftools
#181 opened Apr 3, 2025 by jeromekelleher
1
Add per-sample filtering to language
#180 opened Apr 3, 2025 by jeromekelleher
Per-sample filtering not working properly for query
#179 opened Apr 3, 2025 by jeromekelleher 0.0.3
1
Filter by "CHROM" isn't working
#178 opened Apr 2, 2025 by jeromekelleher 0.0.3
1
File access not supported in filtering
#175 opened Apr 2, 2025 by jeromekelleher
Regex operators not supported in filtering
#174 opened Apr 2, 2025 by jeromekelleher
Number/fraction of samples passing function not supported in filtering
#172 opened Apr 2, 2025 by jeromekelleher
Default variables not supported in filtering
#171 opened Apr 2, 2025 by jeromekelleher
Binomial and Fisher tests not supported in filtering
#170 opened Apr 2, 2025 by jeromekelleher
Sample-aggregate functions not supported in filtering
#169 opened Apr 2, 2025 by jeromekelleher
Variant-aggregate functions not supported in filtering
#168 opened Apr 2, 2025 by jeromekelleher
Array subscripts not working in filtering
#167 opened Apr 2, 2025 by jeromekelleher
1
TYPE not supported in filtering
#166 opened Apr 2, 2025 by jeromekelleher
genotype special values not working in filtering
#165 opened Apr 2, 2025 by jeromekelleher
1
ProTip! no:milestone will show everything without a milestone.