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Issues list

Sequence db size != result db size
#996 opened May 19, 2025 by jpecar
5
MMseqs2 hangs at prefilter stage with large database (1B sequences, 4.1TB) using MPI + GPU build
#994 opened May 9, 2025 by hughuang12
1
Header information lost when merging profile databases
#993 opened May 7, 2025 by tomdstanton
Issues tweaking prefilter
#988 opened Apr 26, 2025 by pieterprovoost
2
extract orf error
#987 opened Apr 26, 2025 by shenwei356
5
when I use GPU to accelarate colabfold_search , it slower than colabfold_search by using cpu
#986 opened Apr 23, 2025 by yank666
5
Is it possible to ensure reproducibility on clustering?
#984 opened Apr 21, 2025 by diegohernansanchez
Is there a way to modify the dbResCount at the command line when doing a search?
#981 opened Apr 11, 2025 by beazerj
Inquiry on contig clustering
#980 opened Apr 9, 2025 by LanSabb
nident (Number of identical matches) is always 0?
#979 opened Apr 7, 2025 by BinhongLiu
2
—format-output argument not recognized
#978 opened Apr 2, 2025 by qutkat
3
Error: clusterDB needs header information
#977 opened Mar 27, 2025 by Gumindu99
2
creating a custom taxonomic database using MAGs
#976 opened Mar 26, 2025 by clb21565
mmseqs easy-search faster?
#975 opened Mar 25, 2025 by LauraVP1994
using MMseqs2 to get the totally different proteins from one dataset compared to another dataset
#973 opened Mar 21, 2025 by liyue9129
3
Input fna file of 50G, resulting prefilter of estimated 9T?
#972 opened Mar 16, 2025 by hellopeccat
2
Pairwise sequence identity matrix is not symmetric
#971 opened Mar 13, 2025 by wehs7661
4
Potential optimization
#968 opened Mar 6, 2025 by yanj14jy15
Have all amino acids in MSA
#964 opened Feb 28, 2025 by caofan
CUDA error: invalid configuration argument : /work/lib/libmarv/src/pssm.cuh
#963 opened Feb 24, 2025 by saro2-a
2
[Question] Createindex command takes a huge amount of time
#962 opened Feb 24, 2025 by nicoceres
2
Tset is ignored on convertalis call against mmseqs gpu accelerated search results
#960 opened Feb 20, 2025 by mcn3159
The effect of --min-seq-id parameter
#959 opened Feb 20, 2025 by jianye00
3
mmseqs don't use enough CPU
#954 opened Feb 18, 2025 by shihai-gong
2
easy-search SAM alignment extends off the end of the reference
#952 opened Feb 17, 2025 by schorlton-bugseq
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