GitHub - tirth2004/motif_detection: Improving the m_finder algorithm by doing pre-computations and finding commonly known motifs through LFRs

tirth2004 / motif_detection Public

Notifications You must be signed in to change notification settings
Fork 0
Star 1

Improving the m_finder algorithm by doing pre-computations and finding commonly known motifs through LFRs

Notifications

Name		Name	Last commit message	Last commit date
Latest commit History 12 Commits
.DS_Store		.DS_Store
Makefile		Makefile
bits.h		bits.h
clustering.c		clustering.c
clustering.h		clustering.h
clustering.o		clustering.o
common.h		common.h
grassberger.c		grassberger.c
grassberger.h		grassberger.h
grassberger.o		grassberger.o
hash.c		hash.c
hash.h		hash.h
hash.o		hash.o
lfr_coeff_estimate.py		lfr_coeff_estimate.py
lfr_directed_1.txt		lfr_directed_1.txt
lfr_directed_1_OUT.txt_OUT.txt		lfr_directed_1_OUT.txt_OUT.txt
lfr_directed_1_cleaned.txt		lfr_directed_1_cleaned.txt
lfr_directed_2.txt		lfr_directed_2.txt
lfr_directed_2_OUT.txt_OUT.txt		lfr_directed_2_OUT.txt_OUT.txt
lfr_directed_2_cleaned.txt		lfr_directed_2_cleaned.txt
lfr_directed_2_mfinder.txt		lfr_directed_2_mfinder.txt
lfr_directed_3.txt		lfr_directed_3.txt
lfr_directed_3_OUT.txt_OUT.txt		lfr_directed_3_OUT.txt_OUT.txt
lfr_directed_3_cleaned.txt		lfr_directed_3_cleaned.txt
lfr_directed_iter2_1.txt		lfr_directed_iter2_1.txt
lfr_directed_iter2_1_OUT.txt_OUT.txt		lfr_directed_iter2_1_OUT.txt_OUT.txt
lfr_directed_iter2_1_cleaned.txt		lfr_directed_iter2_1_cleaned.txt
lfr_directed_iter2_2.txt		lfr_directed_iter2_2.txt
lfr_directed_iter2_2_OUT.txt_OUT.txt		lfr_directed_iter2_2_OUT.txt_OUT.txt
lfr_directed_iter2_2_cleaned.txt		lfr_directed_iter2_2_cleaned.txt
lfr_directed_iter2_3.txt		lfr_directed_iter2_3.txt
lfr_directed_iter2_3_OUT.txt_OUT.txt		lfr_directed_iter2_3_OUT.txt_OUT.txt
lfr_directed_iter2_3_cleaned.txt		lfr_directed_iter2_3_cleaned.txt
lfr_directed_iter2_4.txt		lfr_directed_iter2_4.txt
lfr_directed_iter2_4_OUT.txt_OUT.txt		lfr_directed_iter2_4_OUT.txt_OUT.txt
lfr_directed_iter2_4_cleaned.txt		lfr_directed_iter2_4_cleaned.txt
lfr_directed_iter2_5.txt		lfr_directed_iter2_5.txt
lfr_directed_iter2_5_OUT.txt		lfr_directed_iter2_5_OUT.txt
lfr_directed_iter2_5_cleaned.txt		lfr_directed_iter2_5_cleaned.txt
lfr_graph_generation.py		lfr_graph_generation.py
list.c		list.c
list.h		list.h
list.o		list.o
main.c		main.c
main.o		main.o
mat.c		mat.c
mat.h		mat.h
mat.o		mat.o
metropolis.c		metropolis.c
metropolis.h		metropolis.h
metropolis.o		metropolis.o
mfinder		mfinder
mfinder_1066149.err		mfinder_1066149.err
mfinder_1066149.out		mfinder_1066149.out
mfinder_1066150.err		mfinder_1066150.err
mfinder_1066150.out		mfinder_1066150.out
mfinder_1066153.err		mfinder_1066153.err
mfinder_1066153.out		mfinder_1066153.out
mfinder_1066319.err		mfinder_1066319.err
mfinder_1066319.out		mfinder_1066319.out
mfinder_1067610.err		mfinder_1067610.err
mfinder_1067610.out		mfinder_1067610.out
mfinder_1067921.err		mfinder_1067921.err
mfinder_1067921.out		mfinder_1067921.out
mfinder_1067999.err		mfinder_1067999.err
mfinder_1067999.out		mfinder_1067999.out
motif_ids.c		motif_ids.c
motif_ids.h		motif_ids.h
motif_ids.o		motif_ids.o
network_exmp.txt		network_exmp.txt
network_exmp_OUT.txt		network_exmp_OUT.txt
output.c		output.c
output.h		output.h
output.o		output.o
permutation.c		permutation.c
permutation.o		permutation.o
prob.c		prob.c
prob.h		prob.h
prob.o		prob.o
random.c		random.c
random.h		random.h
random.o		random.o
remove_duplicates.py		remove_duplicates.py
results.c		results.c
results.h		results.h
results.o		results.o
role.c		role.c
role.h		role.h
role.o		role.o
run_mfinder.sh		run_mfinder.sh
stubs.c		stubs.c
stubs.h		stubs.h
stubs.o		stubs.o
switches.c		switches.c
switches.h		switches.h
switches.o		switches.o
twitter_cleaned.txt		twitter_cleaned.txt
twitter_cleaned_OUT.txt		twitter_cleaned_OUT.txt
twitter_combined.txt		twitter_combined.txt
twitter_combined_OUT.txt		twitter_combined_OUT.txt