NCBI Datasets is a new resource that lets you easily gather data from across NCBI databases.
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Jun 5, 2025 - Jupyter Notebook
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genomics-data
Here are 79 public repositories matching this topic...
Development repository for the Bioconductor package 'mixOmics '
r genomics rstats bioconductor r-pkg r-package omics multivariate-analysis multivariate-statistics genomics-visualization r-project genomics-data rstats-package
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May 7, 2025 - R
Benchmarks for classification of genomic sequences
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Mar 18, 2025 - Jupyter Notebook
Ontology for consent codes and data use requirements
owl ontology biomedical-informatics biomedical-applications obofoundry genomics-data datasets-tagged
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Sep 21, 2022 - Makefile
Pandas ExtensionDtypes for dealing with genomics data
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May 29, 2025 - Python
An R script to perform two sample Mendelian randomization screening (with TwoSampleMR) for a custom summary statistic against a set of summary statistics from the IEU GWAS database.
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Oct 4, 2022 - R
ILIAD: A suite of automated Snakemake workflows for processing genomic data for downstream applications
workflow bioinformatics snakemake genomics genetics vcf automatic fastq modularization cram idat genomics-data
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Dec 12, 2023 - Python
Molecular Signatures Database (MSigDB) in a data frame
r genomics tidy-data tidyverse genes r-package geneset-enrichment msigdb geneontology gsea genesets reference-data genomics-data
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Jun 21, 2025 - HTML
Sentieon DNAseq
acceleration gatk bioinformatics-pipeline variant-calling dnaseq bwa-mem dna-sequencing sentieon gatk4 genomics-data
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Dec 30, 2020 - Shell
[deprecated] 🧬 Python API to fetch gnomAD data
genomics variants bioinformatics-databases genomics-data gnomad gnomad-python-api genome-aggregation-database
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Dec 9, 2021 - Python
R package to access the genomics and epidemiology data and Research Library metadata compiled and standardized on outbreak.info.
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Mar 5, 2023 - R
Generative Art NFTs from Genomic Data
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Oct 11, 2021 - JavaScript
Python package for compositional data analysis including CLR/ILR, proportionality, partial correlation with basis shrinkage, and visualizations.
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Aug 28, 2023 - Python
A web application for interactive visualization and exploratory data analysis of variant call matrices
visualization bioinformatics genomics gff3 data-visualization vcf principal-component-analysis genomics-visualization genomics-data genomics-analysis
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Jul 17, 2023 - Svelte
Miscellaneous R script to wrangle data and generate visualizations
visualization ggplot2 correlation heatmap split genomics-visualization ggplot2-geom genomics-data pheatmap
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Aug 14, 2024 - R
CellRank's reproducibility repository.
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Jan 13, 2022 - Jupyter Notebook
2024 BreedWheat Genomic Selection pipeline
r genetics cross-validation statistical-models genomic-selection quantitative-analysis cran-r genomic-prediction genomics-data breeding-data
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Jan 3, 2024 - R
Sentieon DNAscope + Machine Learning Model
machine-learning next-generation-sequencing dna bioinformatics-pipeline variant-calling germline-variants sentieon genomics-data dnascope
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Mar 19, 2025 - Shell
🧮 🔢 Generate multi-sample k-mer count matrix from WGS
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Mar 5, 2020 - Perl
Genomic BigData Warehousing with Apache Spark and LakeHouse Architecture
bioinformatics spark bigdata cloud-computing datawarehousing parquet cloudnative datalake spark-sql genomics-data delta-lake lakehouse
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Jan 19, 2023 - Jupyter Notebook
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