Accurate denoising of voltage imaging data through statistically unbiased prediction, Nature Methods.

This repository is for PyFWI, a Python package for seismic FWI and reservoir monitoring (time-lapse FWI)

This specialized program is used to align and stabilize solar eclipse time-lapse photos.

ESP32-CAM with webinterface as wireless camara or for taking timelapse with Webinterface

glimpse: Glacier Image Particle Sequencer

Deep learning-based instance segmentation tool for roundish objects in 2D and 2D+t data

An ImageJ plugin to quantify ciliary shape, length, and fluorescence.

Comprehensive pipeline for cell segmentation, tracking, and correlation analysis in time-lapse microscopy data. Utilizes deep learning models (Cellpose) for segmentation, with integrated refinement, tracking, and correlation analysis of dynamic cellular behaviors. Developed as part of a Master’s thesis project at KTH Royal Institute of Technology.

ImageJ macros to color stacks by time point and create a video where the projection builds up frame by frame.

napari plugin wrapping the Python package 'roidynamics' into an-easy-to-use interactive tool to analyze the dynamics of intensity in time-lapse microscopy images split into regions of specific geometries

Tool for semi-automatic tracking of migrating Dictyostelium cells from phase-contrast time-lapse image series

A benchmarked comparison of software packages for time-lapse image processing of monolayer bacterial population dynamics

Tools to classify, rename, and create maps for time lapse images.

Computer vision tool for automated detection of arctic birds from time-lapse camera images

Java software for the analysis of image-based experiments of microprobes in suspension

ImageJ macros to analyse microglial cells in live or fixed tissue (Work-in-progress)

Open-source algorithms for adaptive prospective optical gating in cardiac fluorescence microscopy.

A benchmarked comparison of software packages for time-lapse image processing of monolayer bacterial population dynamics