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time-lapse-imaging

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Calcium-Correlation-Tool

Comprehensive pipeline for cell segmentation, tracking, and correlation analysis in time-lapse microscopy data. Utilizes deep learning models (Cellpose) for segmentation, with integrated refinement, tracking, and correlation analysis of dynamic cellular behaviors. Developed as part of a Master’s thesis project at KTH Royal Institute of Technology.

  • Updated May 27, 2025
  • Jupyter Notebook

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