A platform for sharing and reusing biomodeling studies including models, simulations, and visualizations of their results
Registry of containerized biosimulation tools that support a standard command-line interface
Ontology of algorithms for analyzing biological models, their parameters, and their outputs
Tool for validating that biosimulation software tools implement the BioSimulators standards for simulators
Utilities for building standardized command-line interfaces for biosimulation software packages
An efficient Java™ solver implementation for SBML
Template for a repository for building a BioSimulators-compliant command-line interface and Dockerfile for a biosimulation program
AMICI biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container
tellurium biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container
COBRApy biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container
PySCeS biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container
Tutorials for BioSimulators
COPASI biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container
Repository of rule-based models implemented with the BioNetGen model language (BNGL) and command-line program for publishing RuleHub to BioSimulations
BioNetGen biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container
Multimodal Evaluation for Sound Event Detection (SED)
MASSpy mathematical simulation program via BioSimulators-compliant command-line interface and Docker container
GillesPy2 biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container
Command-line program and scheduled GitHub action for publishing the BiGG model repository to BioSimulations
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